Dgun003012.1
Basic Information
- Insect
- Drosophila gunungcola
- Gene Symbol
- -
- Assembly
- GCA_011057485.1
- Location
- WTSR01005227.1:228060-231536[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.12 12 6.5 3.2 2 23 322 344 321 344 0.94 2 17 0.59 55 4.4 0.1 1 23 351 376 351 376 0.90 3 17 0.023 2.2 8.8 2.2 2 23 387 408 387 408 0.93 4 17 0.074 6.9 7.2 0.1 3 23 449 470 448 470 0.95 5 17 0.003 0.28 11.6 0.3 3 23 478 498 476 498 0.95 6 17 0.0004 0.037 14.4 0.3 2 23 522 543 521 543 0.97 7 17 0.063 5.8 7.5 0.0 1 20 551 570 551 572 0.93 8 17 0.0021 0.19 12.1 0.9 1 22 591 612 591 615 0.91 9 17 0.14 13 6.3 1.4 3 21 622 640 622 641 0.90 10 17 0.006 0.56 10.7 0.5 1 23 660 685 660 685 0.96 11 17 0.034 3.1 8.3 1.5 2 23 703 725 702 725 0.93 12 17 0.00056 0.052 13.9 0.2 2 23 731 753 730 753 0.92 13 17 0.012 1.1 9.7 0.2 2 23 757 779 756 779 0.95 14 17 1.3e-05 0.0012 19.1 2.0 1 23 785 807 785 807 0.98 15 17 0.0016 0.15 12.5 2.2 1 23 811 834 811 834 0.95 16 17 1.6e-05 0.0015 18.7 1.3 1 23 840 863 840 863 0.97 17 17 1.5e-05 0.0014 18.8 0.2 3 23 869 895 867 895 0.84
Sequence Information
- Coding Sequence
- ATGTCGGAAAACGCGAAAAACGATAGCTGTCTGCATTGCTCCGTATTCAGTACGAAATACCAGTACCAGGAGATATTCGATGAGTTCGGAATCGAGCTGGGTCTCCAATCGCTGCTGGCCAAGCACTACCAGATTGATGTGACACCCGATCCCCAGAAAAAGCAGCTCCTGTGCGAGGTGTGCGTCAACAATATCATCCGCCTGTTCGACATCGATGAATTGCAGCGGGAAAGGGATGCAAATGCAGCCAAGGACGAGGTGCTGCAGGCTGAGGTGCTGCCCAAGCAGGAGGAGCCTATCATCATCACCAAGGTCGAGGCACCGCCACCAGCTGCGAAGCCTGCGAAGCACCCAACGCCCCCAAAGCCTCTGGCCAAGATTCTGCGTCCTGTGCCCATTACTCCCACCCGGGAACCAAGTGCCCGGATCAACAAAGGAATTCCAGCGCCCCAGCNNCCGTCCCGAGCCCAGGATCCTCCCCAGGNNACTTCTCCGCTGAAAATTGAAGCAGTGCCGGCTCCAAAAGATGCAGACCAGGAGCAGATAAGTGTCCTGATACAAAACATCCTCGACGAAGATGAAACAGTTGCTGAGGAGGTGGTCAGTGAAGCTAACCACATCGCCGAANAATCGGAAACCACAGCCGAAATGGTTCTGCTGAACCACGAATCCGAGGCTGAGCCTGTTCTGGACGAGGAGGATGTATACATATACGAGCATGAAGATATTCTAGATCCAGACTTGGAAGATGTGAAGGTTAAGCCTGCGGTTCGTCCATCCAGATTAGTAGTTCAAGCCGAGGAAAGCCAAAGCGATGGCGATATCGACGAGGGTGAGGCCAGCAATGTGGTTCTCTTTAACTTTGTTGACATCAAAGAAAAGGATGAAATAAATGACATTTCGGAGTACTTGGCCACGGTGGTAAAGACCAGCTTTGAGAAACTGGCATTTGAGTGGTGCACAGTGTGCAAGCACTGCTCTCTGAAGTGTCCCACATTTGAGAGTCTTTTCAGTCACATTGTTAAGGCCCACAGAACGCGGAGAGATGTCTACCAGTGTCCCATTGAAGGCTGCAGCAAGGAGCTAAAGGGTCGCCAGTTCCTGGCAATGCATTTGGTTCTTTTGCATGCTCCCGTGGCTGAGATTCCCATTTATGGCAGCTGCCCGGAATGTAAAATGACCTTCTCCAACATTTTGCAGTACAACAAGCACTCTTGTGCCCATGTCATTAAAAAGAAACGCGGTGTCCGCTCGTTTTGTGAAATGTGCTCTCTGGAGTTTCCATCCTGGAAGCGTTTCAGTTTCCACAACCAATTCCACCTGGAGAAACATAGACCTCGCGCTTGTTTCGTCTGCGACTTTGCCAGCACCAATATCGATGAGCTGTTCCAGCATTTAAATTACGCCCATGAGCCTGTGGGCACCTTATTTTGCGACCTTTGCGACCGCACTTTCCGGGACCCTGCCGTTTTCATGGAGCACAACAAGTCGCATGCCAATGTGAGCAGCACAACCTATTCCTGCGGCGAATGCATGGCAAACTTTGAGCATGGCAGCGTGGTAAGCTGTGAGCTCTGCTCACGCGAGTTCGCCACCGAAGCCACCTACAATATTCACATGAAGAAACATCTGATCATCGAGCGGGATGTGCACGTGTGCGGAAAATGTGGCCTGGTGAGCGACAGCCGCGAAACACTACTTGCCCATGTGGATTCCCTGAAGTCAGCCTGTTTTGGCTCTAAGATATACATGGAACTGCTCCGTGATGCCTACGTCTGCGAGTACTGCTCCTCGTACTTCAAGGAAAAGGCCCATCTGCAAGCCCATCGAGAGTCGGGAGTTCATAAGGACGGATTGTACTGGTGCCAGCCCTGCGGCAAGGAATTTCCGCACATGAAACTGTACCGCCATCACCTGCGCAACTATCAGCAGCTGCGCTCGGACTCGACGCATCGCAAGCTTGAgatttgtgtattttatatgTGCGATCAGGAGAACTGTTCGGAGGCCTATGCGAATTGGAACTCCTTGTACACACACAAGCGACGCACTCACGAATCTTCGAACAAGCAGGCGGAGAAGTCCTCCAAGAGCACMCAAGAGTGGATTTGTCAGTTCTGTTCAAAGGAGTGCCGCTCGAAGATGTCCTTGTCTGTTCATGTGGCCAGGAGCCACAATAATGacAACGTGTCTTGTCCCTTGTGCAATGCCTCGTACAAAAGCCAGGATGCGCTGGCCAAGCACCATGCCTATTGGCACGAGCCCATCGAGTGCCCTCAATGTTTCAAGATCGTTAAAAATCGTCGGAACTATGATACTCATGTAAACGTGGTTCATTCGAACAAGAAGCGGTACTCCTGCAGCATCTGTAATAAAGGTTTCTATCACAGAAGTGAAATGGAGGCGCATCAGAAGCTCCATGGTCAGTCTTACAGCTGCGAGCATTGCAGCTTCACCACCAGGAATAAGAAATCCCTATCAGTTCACATCCTGGGTCAGCATTACAAGCGCTTCGCCTTTGAGTGCAAGGTGTGCAAGAAGAGGTTTGGACGCCGACAGGGCTTGAGTACGCACATGCAGCGGGCTCATGGGTCCAAGTACATGTGTCGTGACTACTTTGAGGGCGGCTGTGGACGCACTTTTGTAAACAGTTCCCAGCTGAATGTGCATGTGCGAAAGGTACACAAGGGAGTCATCTTCCTCCAGGAGGACCTCGTCGAAGAGGATGAATATGTCAGCGACGGCCCGTCCACATCCAAGAAGCGCTGCATTCGTATCAACGAAGATAATATTGAGTTTATAGAAGACGATGAAGAAGGAGATGATGGAGAAGATCAGGATGGCATTGGATTGGAGGAAGTTGACGAGGATGGGAACGAATATATCGACGAGGAACCAGATCAAGACCCCAAGCATTGA
- Protein Sequence
- MSENAKNDSCLHCSVFSTKYQYQEIFDEFGIELGLQSLLAKHYQIDVTPDPQKKQLLCEVCVNNIIRLFDIDELQRERDANAAKDEVLQAEVLPKQEEPIIITKVEAPPPAAKPAKHPTPPKPLAKILRPVPITPTREPSARINKGIPAPQXPSRAQDPPQXTSPLKIEAVPAPKDADQEQISVLIQNILDEDETVAEEVVSEANHIAEXSETTAEMVLLNHESEAEPVLDEEDVYIYEHEDILDPDLEDVKVKPAVRPSRLVVQAEESQSDGDIDEGEASNVVLFNFVDIKEKDEINDISEYLATVVKTSFEKLAFEWCTVCKHCSLKCPTFESLFSHIVKAHRTRRDVYQCPIEGCSKELKGRQFLAMHLVLLHAPVAEIPIYGSCPECKMTFSNILQYNKHSCAHVIKKKRGVRSFCEMCSLEFPSWKRFSFHNQFHLEKHRPRACFVCDFASTNIDELFQHLNYAHEPVGTLFCDLCDRTFRDPAVFMEHNKSHANVSSTTYSCGECMANFEHGSVVSCELCSREFATEATYNIHMKKHLIIERDVHVCGKCGLVSDSRETLLAHVDSLKSACFGSKIYMELLRDAYVCEYCSSYFKEKAHLQAHRESGVHKDGLYWCQPCGKEFPHMKLYRHHLRNYQQLRSDSTHRKLEICVFYMCDQENCSEAYANWNSLYTHKRRTHESSNKQAEKSSKSTQEWICQFCSKECRSKMSLSVHVARSHNNDNVSCPLCNASYKSQDALAKHHAYWHEPIECPQCFKIVKNRRNYDTHVNVVHSNKKRYSCSICNKGFYHRSEMEAHQKLHGQSYSCEHCSFTTRNKKSLSVHILGQHYKRFAFECKVCKKRFGRRQGLSTHMQRAHGSKYMCRDYFEGGCGRTFVNSSQLNVHVRKVHKGVIFLQEDLVEEDEYVSDGPSTSKKRCIRINEDNIEFIEDDEEGDDGEDQDGIGLEEVDEDGNEYIDEEPDQDPKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00588295; iTF_00494540; iTF_00512156; iTF_00529709;
- 90% Identity
- -
- 80% Identity
- -