Drel006609.1
Basic Information
- Insect
- Drosophila rellima
- Gene Symbol
- -
- Assembly
- GCA_035043635.1
- Location
- JAWNMV010000257.1:566404-571970[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.069 4.8 7.9 0.2 3 23 315 336 314 336 0.91 2 10 0.00025 0.017 15.6 0.3 6 23 345 362 345 362 0.99 3 10 9.6e-06 0.00067 20.0 0.3 1 23 368 391 368 391 0.98 4 10 0.00014 0.01 16.3 0.9 1 23 403 425 403 425 0.98 5 10 0.00013 0.0087 16.5 5.0 1 23 432 455 432 455 0.96 6 10 1.3e-05 0.00094 19.6 1.8 1 23 461 483 461 483 0.96 7 10 0.17 12 6.7 1.0 2 23 492 513 491 513 0.96 8 10 0.00021 0.014 15.8 1.9 2 23 519 541 518 541 0.92 9 10 2e-07 1.4e-05 25.3 0.7 2 23 548 569 547 569 0.97 10 10 0.0002 0.014 15.8 4.4 1 23 575 598 575 598 0.96
Sequence Information
- Coding Sequence
- ATGATTTGTCGCTTGTGTTTGAAAAACATAAACTCAAATAATGCCGTCTACCTGTTTGAAACGAACGACACCCTAGCCGAATCCACTTTGCTTAAAATGATAGCAAAGTTTTTGCAGCTCGAAATAACGCCAGATGATAACATCTCGACAAACATTTGCCACGAGTGCTGTGAACATCTGGAGGATTTCAACAACTTCTGGCAGCTGGTGGAACAAAAACAGGCCACACTCAAAAATGAATTCCTCAACGTGGACGTCGATTGTGTCGCCCTCAAATGGACGGGCGGCATCGATGTGGACGTGAGCATCGACGAGCTGCCGCTTGTGGCCGATGAGATGGACGAGAAGCCCCTGGACATACATAATCTCAGTCTGCTGGGCAGTGTGCTCGATGTCAATGTGGACAGTGTCGAGGTGCCGCATTCAAAGCAATCGCTGCGCAATCAATCAATGTTACCAAATGCAGCCGAACATGATTGTGATGTTGCGGATGAGAAGCCGCTAATCCATGACAGCAGTgagcacagcaacaaaagtgcCAGAAACTTTCTCtcttcatcctcctcctcctcctcctgctccaccCCTTCcgccaatgatgatgatgatgatgatgaCGAAGTGCCTCTGGTGAAGCTGCAGCACAAACTGAAGCCGAAGCGAAAAGTGCGCGCCACGCGGCGCAAGCAACGCACATTAACCCTGGCCCAGGAGCTGGATCAGCTGTTCGAGGAGAGCAACGCGGATAGTAAGAGGAATGTGCGCCGCAAGAAACTAAGGACTACGAATGCAATAGCAATTGCAATCGCTAGCGCAAATACGCCAACGGACTCCCAGAAGGATGAACTGGAGGCGGCTATGGAACGGCGTCCCAAGGGCTGTTCCCGTGCCCAGCTATCGAAGCGTTACGAGGAGGCCATTGCCAGTTATATGAGGGCCGACTGCGATCTGTGCGACTTCAGCGCCAAGTACCTGTCCCAGTTGAAAGTCCACTTCCTCGAGGTGCATCAGCAGGATGCGTATCTCAAGTGCTGCAACAAGATCTTCAATCGACCCTCCAAGCTAATGGATCACATACGCAAGCACATCAATCCCAAACTCTTCACCTGTTCCATCTGCAACAAATCGTTAAACTCGCAGGATTATCTGGCCACGCATATAGAAACGGTGCACAATAAGGTGGCCAAGATTGGCAAGGTGTTGAAGTTTCCGTGCTCCAAGTGCGAGCGAACTTTTAGTAGCGAGCGGCGTCTGGCCAATCATGTGATGAAGCACGATACGGATCAGTTGGAGCACAGTTGTCACATTTGTGAAAAGAGCTTCGCCAATGTGCATCGACTGAGACGGCACATTCAGTCCATTCACGAGGATTTGCATCCACACGTCTGCGATATTTGTGGCAAGAAGTTCAAGTTTAAGCCATCGTTTGAGCGCCATCTGCTGGAGCATCAAGGGGTCGTCGCACCGGCCATGGAGTGCACCATCTGCGGCGTCTGGCTGAAGAATGAGCACAGTCTGCGACTGCATCGCTTCACGCACGACAGCACCAATACCGTCTGTCCGCATTGCTCCAAGACGTGCAGTTCCCGGACAGCGTTGCGGGCCCATGTCGAGTACGCGCACAAGCTGACGACGAGTCTGCAGTGCACGTATTGCGAGAAGAGCTTCAAGCAGCAGCGGAATCTGGAGGAGCACATGGCCATACACACGGGACTGCAGCTCTACAATTGCCCGCATTGTCCCAAGGAATGCCGGTCCCGTTCCAACATGTATGTGCACATCAAGCAGCGACATGCGGACGAGTGGCTCAAGGCCAAAATGGCTCGATCCCACAATCCGCAATTCAAGCCACATGCCTAG
- Protein Sequence
- MICRLCLKNINSNNAVYLFETNDTLAESTLLKMIAKFLQLEITPDDNISTNICHECCEHLEDFNNFWQLVEQKQATLKNEFLNVDVDCVALKWTGGIDVDVSIDELPLVADEMDEKPLDIHNLSLLGSVLDVNVDSVEVPHSKQSLRNQSMLPNAAEHDCDVADEKPLIHDSSEHSNKSARNFLSSSSSSSSCSTPSANDDDDDDDEVPLVKLQHKLKPKRKVRATRRKQRTLTLAQELDQLFEESNADSKRNVRRKKLRTTNAIAIAIASANTPTDSQKDELEAAMERRPKGCSRAQLSKRYEEAIASYMRADCDLCDFSAKYLSQLKVHFLEVHQQDAYLKCCNKIFNRPSKLMDHIRKHINPKLFTCSICNKSLNSQDYLATHIETVHNKVAKIGKVLKFPCSKCERTFSSERRLANHVMKHDTDQLEHSCHICEKSFANVHRLRRHIQSIHEDLHPHVCDICGKKFKFKPSFERHLLEHQGVVAPAMECTICGVWLKNEHSLRLHRFTHDSTNTVCPHCSKTCSSRTALRAHVEYAHKLTTSLQCTYCEKSFKQQRNLEEHMAIHTGLQLYNCPHCPKECRSRSNMYVHIKQRHADEWLKAKMARSHNPQFKPHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00601987;
- 90% Identity
- iTF_00528989;
- 80% Identity
- -