Basic Information

Insect: Drosophila pseudotakahashii
Gene Symbol: -
Assembly: GCA_035046095.1
Location: JAWNOE010000247.1:17299763-17301967[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.084 7.1 7.6 0.1 1 23 332 355 332 355 0.96

2 10 1.5 1.3e+02 3.6 0.2 6 23 365 382 365 382 0.97

3 10 2.2e-05 0.0019 18.9 0.5 1 23 388 410 388 410 0.98

4 10 0.00022 0.019 15.7 0.5 1 23 425 448 425 448 0.93

5 10 0.00052 0.044 14.6 0.7 1 23 456 479 456 479 0.97

6 10 0.00016 0.014 16.1 1.7 3 23 487 508 485 508 0.92

7 10 0.0013 0.11 13.3 0.4 2 23 520 542 519 542 0.97

8 10 0.00064 0.054 14.3 7.1 1 23 549 572 549 572 0.93

9 10 2.8e-06 0.00024 21.7 0.8 1 23 578 600 578 600 0.98

10 10 7.9e-05 0.0067 17.1 1.3 1 23 606 629 606 629 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.084	7.1	7.6	0.1	1	23	332	355	332	355	0.96
2	10	1.5	1.3e+02	3.6	0.2	6	23	365	382	365	382	0.97
3	10	2.2e-05	0.0019	18.9	0.5	1	23	388	410	388	410	0.98
4	10	0.00022	0.019	15.7	0.5	1	23	425	448	425	448	0.93
5	10	0.00052	0.044	14.6	0.7	1	23	456	479	456	479	0.97
6	10	0.00016	0.014	16.1	1.7	3	23	487	508	485	508	0.92
7	10	0.0013	0.11	13.3	0.4	2	23	520	542	519	542	0.97
8	10	0.00064	0.054	14.3	7.1	1	23	549	572	549	572	0.93
9	10	2.8e-06	0.00024	21.7	0.8	1	23	578	600	578	600	0.98
10	10	7.9e-05	0.0067	17.1	1.3	1	23	606	629	606	629	0.97

Sequence Information

Coding Sequence: ATGTCGGCCTGCGTTCTTTGCCTATCCACCTCCTATGCCGGCCACCTCCTGCAGTCGCCGGAGGGCGTCCGCCAGAACATTAGGGCGACCATCATTAAACACTTTTCGTTCTCCGAGGTACTTACGGCGGGCAAGGATGCTTCGGTCTGCCGGGAGTGCTGGACCTGCGTCAGCAGCTTCGAGGAGTTCCACCAGCGGGTCTCGGGCCTGCACCAGACCACCAGGAGCAGCGACTCCAAGAGCGTGCCCATCGAGTTCTGCGGCCAGACGGAAGTAGAGGTGGAGGTGGCCACCAATCCACTGTTCTCCGCCGAACTGGACGCTTTGGCCGAGGGCTTCTTTGCTCCGAGCGAAGTCAAGGTGGAGGTGAACGAACTGGAGCCCTTGCCCAAGGTGGAACTCCTGGAGGACCCGGTTGACACGGAAACCAGACCTGCTACCAAGCGTCGGGGCTCCCAAAACGACGGTTTTCCGCACCCAAAGCGGCGCATTAAAAACGAACGGCCAGTGGACAGTGACTCAGATGCTCCTCTAGCGAATTTCCTGTCCTCCGACATCAAGAGCTCTAATGGACCAGCTAAAGCCAACGAATCGACCAAGGGCCGCCCGCTGCGAAGGAGTACACGGCGTGGTCGTCCGCCCAAGACCAAACCAGAGCCGCCTGCTTCCCCCAAGAAGGAACTGGACTccgacgatgacgacgacgttGAAGTTGACAGGGAGTTTGTGGCTGCCGAGGCCGTCCTGGGCACGGACGACAGCGGTAGCTCGTCCAGCGATAGCAGTGGCGAGGACTCAGACCACAGTTTGCCGGACATTGAGCCCGAGGAGCGGTACGCCGAAATTCCCAAGCGGGTGGTGGTGAAGCCCAAGAAATACCGCAAGCGCGAGAAGCCGCTGGTGCCACCCGTTCGCCTCAGCCGCGAGGAGATCGAGCGACGAAAGCTCCAGCAGAGCGAGTACGATGAGATTATCCTGCAGTTCTTCAAGAAGTTCCCCTGCGCCATCTGCAACCTGCTGGTGCAGAACTTTGCCGACATGCGACGCCATCAGCGCGTCTCACACAACATCGAATCTGGCTGGATCCAGTGCTGCGGGCGCAAGTTCCACATCCGCAAGGCTTTGGCGGAGCACGTGCTGGTCCACAAAAATCCGGAGCACTTTATGTGCTCTCAGTGCGGTCGGGTATTCCAGGACTCGCGCACCCTGGAGATTCACGAGCAGACGCACACGAATCCGGAGGTGAAGTCGGAGCCAAAGGAGAAGCCCGTCTACCAGTGCGAGAAATGCCCCAAGAGCTTCATCACCAAGGCGGCCATAGAGTACCACTACGTGTCCAAGCATGTGCCCAAGTCCGAGTTCAAATACTCCTGTCCGGAGTGCAACAAGAAGATCCCCACGGAGCGCAAACTCAAGGAGCACTTGAAGTACATGCACGACCCGGAAACGGCCATCATCTGCGATAAGTGCGGCAAGACGCTTCGCTCACAAACAACTCTTAAAAAGCACCACGAGCTGGAACATTCCGATGAGCCGCGTCCCAAGCCCGATCCCGTGCAGTGCGAGATTTGCGGCACCTGGCTGCGCCACCTGTCCGGACTGAAGCAGCACATGAACACGGTGCACGAGCCGCCGGGCGGTGAGCACCGCTGTCACATCTGCAACAAGACATCCACCAATTCTAGGGCCCTCAAGCGCCACATCTACCACAACCATCTGTGCGAGCGCAAGTTCAAGTGCGGAATGTGCGAAAAGGCCTTTAAGCGACCACAGGATCTGAGGGAACACACATCCACCCACACCGGCGAGGTTCTATACACCTGCCCAAATTGCCCGATGACGTTTTTTTCCAACGCCAACATGTACAAGCACCGCCAGCGACTCCATCGCGCCGAGTGGGAGGCGGACCGCAAGAAGCCGCTGCCGCCGAACATCATGAAGATTTCGCAGGGCGCCACCTCGGCGATGAAGAAGCGCCAGACGACAGGCGTTGCCCTGTTCCCACAGTCGCAAGAACAGAAGCAATAG
Protein Sequence: MSACVLCLSTSYAGHLLQSPEGVRQNIRATIIKHFSFSEVLTAGKDASVCRECWTCVSSFEEFHQRVSGLHQTTRSSDSKSVPIEFCGQTEVEVEVATNPLFSAELDALAEGFFAPSEVKVEVNELEPLPKVELLEDPVDTETRPATKRRGSQNDGFPHPKRRIKNERPVDSDSDAPLANFLSSDIKSSNGPAKANESTKGRPLRRSTRRGRPPKTKPEPPASPKKELDSDDDDDVEVDREFVAAEAVLGTDDSGSSSSDSSGEDSDHSLPDIEPEERYAEIPKRVVVKPKKYRKREKPLVPPVRLSREEIERRKLQQSEYDEIILQFFKKFPCAICNLLVQNFADMRRHQRVSHNIESGWIQCCGRKFHIRKALAEHVLVHKNPEHFMCSQCGRVFQDSRTLEIHEQTHTNPEVKSEPKEKPVYQCEKCPKSFITKAAIEYHYVSKHVPKSEFKYSCPECNKKIPTERKLKEHLKYMHDPETAIICDKCGKTLRSQTTLKKHHELEHSDEPRPKPDPVQCEICGTWLRHLSGLKQHMNTVHEPPGGEHRCHICNKTSTNSRALKRHIYHNHLCERKFKCGMCEKAFKRPQDLREHTSTHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPLPPNIMKISQGATSAMKKRQTTGVALFPQSQEQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00507782;
90% Identity: iTF_00536960;
80% Identity: -