Dpse008221.1
Basic Information
- Insect
- Drosophila pseudotakahashii
- Gene Symbol
- -
- Assembly
- GCA_035046095.1
- Location
- JAWNOE010000121.1:1044693-1048154[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0004 0.034 14.9 0.9 3 23 180 201 179 201 0.96 2 15 0.0018 0.15 12.9 2.6 1 23 216 239 216 239 0.96 3 15 0.0028 0.24 12.2 3.5 1 23 310 333 310 333 0.96 4 15 0.0037 0.31 11.9 0.7 2 23 389 410 388 410 0.96 5 15 0.02 1.7 9.6 0.6 1 23 555 577 555 577 0.94 6 15 0.00026 0.022 15.5 0.7 1 23 584 607 584 607 0.96 7 15 0.00089 0.075 13.8 1.6 2 23 616 637 615 637 0.96 8 15 0.00075 0.063 14.1 0.1 2 22 664 684 663 687 0.90 9 15 0.0014 0.12 13.2 1.2 1 23 721 744 721 744 0.96 10 15 6.7 5.7e+02 1.6 1.8 1 22 751 772 751 772 0.94 11 15 0.015 1.3 10.0 0.3 1 23 781 804 781 804 0.96 12 15 2.8e-06 0.00023 21.7 0.5 1 23 825 848 825 848 0.97 13 15 0.038 3.2 8.7 0.2 1 23 858 880 858 880 0.94 14 15 6.4e-05 0.0054 17.4 3.7 1 23 886 908 886 908 0.99 15 15 6.3e-05 0.0053 17.5 1.0 1 23 914 936 914 936 0.97
Sequence Information
- Coding Sequence
- ATGACGCGGACTTGCAGAATATGTGGCGGCGACGACGGTCGCTACTGGATTGAAACGCCCGTGGAGAAGTACGCCGAGAAGACCTTTGGCCAGCTGCTGCTCGAACTAACGCGCATCGAGGTGGCCATGGCGCAGGCGGAGAAGTTCCCGCAGTGGCTGTGCAACGCGTGTGCCGAGAAGCTGGAGAGCACCTATGATTTCGTGCTGCAGGCGCGCCAGACGCACGAGCTGTGGGTGCAGAAACTAGGAGACTCTGTGGACGGGGATGACCAAATGGACGGCACGGGCACCGAGGCCCTGGAGTGTCTCCGCGAGACACCCATCCACCTGTTTGAAATCGAGGGCGTGACTATCAAATCCGAGGATCTGGCTCCCACGCAGCAAGCGGCCAAGGCAGACCCTTTGGTGCGCACGCGTTTTGTCAAGCGGAGCATCGTGCACTTCAGCGACTCGGAAGACGACCAGGACGATGTGCCCCTGCGGCAGCGCAAAATGACCTCCTCGCTATGTGCCTCGGAGCCGCCGAAGCAGAATATTTGTGAGCTGTGCAACAAGGCCTTTCGATATGTCACCAATCTGTACCGCCACAAGCAGAGGGACCACGGCATACTGGGAAAAAACGGAGAAGACTATGATGACGACTACTACAAGTGCGACCAGTGCGACAAGACCTACAAGTACGTGATGGCACTGGTGAAGCACAAGCACAGCGAGCATGGAGCCAGTCTCCTGCCCTCCAAGACGTCCAGGCGAAAGTTACCCGGCAGGCCGTCGACATTGCCTGAGGTTGCCAGTCCGTCTAGTCCAGCCTCCACCTCTGGGACCTCCACTCATCGCAGCAGGACCAACAACGACACCCTGGTGCACAGCATCATCAAGGCAGTGGAACTTTCGGATGAGGATGGCAACAGCAGCGCAGACAATTACTACAAGTGCGATCAGTGCAGCAAGTCCTACAAGTACATAGTCAGCTTGATCAAGCACAAGCATAAGGTGCACTCTGACAAGCAGTCTGATAAGCAGTCGGAGACCGAAGATGATCAGCCACTGGCCTCCACGTCGGCCTCGGCAGTTACACCGGCTGCTGCCAAGACATCGAGGATCAACCGAAGAGTCGATGGGTTCGACTACCATCGCAGCGAGCCGAATGGCGCCAAGGAAATCAAATGTATGATCTGCCTGCGCCGGTTCACCAAATTGCGTGAGCTGAGGGATCACCTGCAGGCCCATCCCACTGACTTCGGCTTCGAGGCGCACGGCGAGCCCATTGAACGCATTGCGGAGGGATTTTTCAAGACGGCCGTGGAGTCCACTACGGAGGGCTTGAAGCGGAGGATCTTTCGGGATCTCAGGATGGGCGTGTATGGGCGCTACTACTCCATCACTAATCAAGCTCGTTACGAGATGACCCTGGACAGCTCGGATACGGACAGTGATGGCGATGTCGAGTCGGATGTCGTCATCAGGCGAAGCTATTCCTGCGAGCTGTGCGACTCTCCGGAGGCTAGGTGGCCGCGCAAGTACCTGCTGCACCAACACCACCGAAACGAGCACACCTGGCTGGATGCGCCACATGTCTGCCAGCGCTGCGACTCGCGGTTTCTCAGCGCCCAGCTCCTAGACCACCACACTAGCCAGCTCTGTCAGAACACACTGAAGCGCTTCATGTGCGACAAGTGTCCCCAGCGATTCTTTTGGCGCCGCAATCTCCGCGCCCATCTCGTCGAACACAAGAGCAAGCAAGAGACGTATCCTTGCGACCAGTGCTCCCGCAGCTTCCAGGACAAGAGCGCCGTGACCAAGCACAAGTTGATGATGCACCGTGATAGTAATATGCAGCTCCTTCCCTGCCGCTGGTGCACTCGCACCTTCTATCGCCCCGCCCTGCTGTACAAACACTTGCATAGGCACGGGTTCACTGGTCAGGATCTGCCTCTGGCTGAAACTCTGCTGGCGGATGCCTCAAAACCGGCCGGACCGAAAAGCATCCAGTGCAAAATGTGTGACATACAGTTCATCAGCGTAGCGGACTTGCGAAGGCACATCTCGATGCAGGGCCACAGCGATCAGCCGTCGGCCTACATGATTAGCACTGCAACAGGTTTtgagctgctgctggaggaTACAGATGACAGTGATGAGGAAAGCACGGGGAGGTCATACACTTGCGATCTTTGTGATCTGAACTTCCGGCGACGACGGGAAATGAGTGAGCACCAGTACTCGCTCCACAGCTTCGACAAACTACCGCATTCCTGCGAGCACTGCATTTTTAAGACAGTGGATAAgTTCATGCTGGATCAGCACCTTCGCACCCAGTGTATGAACACCGAAAAGAAGTTCGCTTGCTCGCGTTGTGGCTACAAGTTCATGTGGGAGGAGAACCTGACCCAGCATCTAGCCACCCAGCATCCGAAGCAACCCACAGTTCCCGAGCAGCAGCCACCATTGAGGAGGAAGCGGCGCTTCCGCTACCAGTGTCCCCACTGCTGGCGGTCGTTTGTCGTGCAGCCCAGCCTGGAGAAGCATATTCGAGACATGCATGTGGCCAAAAAGAATCCGGGAAAGAAGTACCTCTGCTCGCTGTGTGGCCTGGAGTCGCTGACGCCCAACAAGCTGAACATCCATATGCGGCGCCACATGGGCGAGAAGCCCTTCAAGTGCGATCTCTGCGACATGCGCTTTACGGTCCACTACGAACTGAAGGTTCACCGCCGGAAACACACCGGCGAGAGACCCTACCAATGCACCTTCTGTGCCAAGGACTTTGCACGACCGGACAAATTGCGCCGCCACGTCTTTATGCACAACGTCAAGTCATAG
- Protein Sequence
- MTRTCRICGGDDGRYWIETPVEKYAEKTFGQLLLELTRIEVAMAQAEKFPQWLCNACAEKLESTYDFVLQARQTHELWVQKLGDSVDGDDQMDGTGTEALECLRETPIHLFEIEGVTIKSEDLAPTQQAAKADPLVRTRFVKRSIVHFSDSEDDQDDVPLRQRKMTSSLCASEPPKQNICELCNKAFRYVTNLYRHKQRDHGILGKNGEDYDDDYYKCDQCDKTYKYVMALVKHKHSEHGASLLPSKTSRRKLPGRPSTLPEVASPSSPASTSGTSTHRSRTNNDTLVHSIIKAVELSDEDGNSSADNYYKCDQCSKSYKYIVSLIKHKHKVHSDKQSDKQSETEDDQPLASTSASAVTPAAAKTSRINRRVDGFDYHRSEPNGAKEIKCMICLRRFTKLRELRDHLQAHPTDFGFEAHGEPIERIAEGFFKTAVESTTEGLKRRIFRDLRMGVYGRYYSITNQARYEMTLDSSDTDSDGDVESDVVIRRSYSCELCDSPEARWPRKYLLHQHHRNEHTWLDAPHVCQRCDSRFLSAQLLDHHTSQLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKSKQETYPCDQCSRSFQDKSAVTKHKLMMHRDSNMQLLPCRWCTRTFYRPALLYKHLHRHGFTGQDLPLAETLLADASKPAGPKSIQCKMCDIQFISVADLRRHISMQGHSDQPSAYMISTATGFELLLEDTDDSDEESTGRSYTCDLCDLNFRRRREMSEHQYSLHSFDKLPHSCEHCIFKTVDKFMLDQHLRTQCMNTEKKFACSRCGYKFMWEENLTQHLATQHPKQPTVPEQQPPLRRKRRFRYQCPHCWRSFVVQPSLEKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHMGEKPFKCDLCDMRFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVFMHNVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00548234;
- 90% Identity
- iTF_00536949;
- 80% Identity
- -