Dpse018845.1
Basic Information
- Insect
- Drosophila pseudotakahashii
- Gene Symbol
- -
- Assembly
- GCA_035046095.1
- Location
- JAWNOE010000266.1:1116815-1123548[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-12 6.6e-09 35.6 0.0 1 40 670 710 670 713 0.90 2 4 1.1e-13 1.8e-10 40.6 0.1 2 39 725 762 724 765 0.94 3 4 1.9e-17 3.3e-14 52.6 0.0 1 45 779 824 779 824 0.98 4 4 1.9e-19 3.3e-16 59.0 0.0 1 43 831 874 831 875 0.97
Sequence Information
- Coding Sequence
- ATGCATCCTTTCCTGACGCTGCACCCCTTCCTCTTGGCCTGTAGTTCCGTTTCCGGCGCCTGCCATTTGCATCTACAGCTGGAAAAAAATTCTTTCATTTATTCGAAGGATTCTTCATCTCCCTCCCCATACTTGGGCCTCTTGCGCACCGCCGAGCAGCTAAAGATCAAAGGCCTCTGCGAAACCGCTGAGAATGCGGATGACCTGAACGACGCGGCCACAGCAACGATCACAGTTTCAGAGAACATTCAGCAGGCGGTCGTTGGCAATATTGTTAACGCCACCATAGTTCCCGGAGCTCCATCGCCCTCcttggagcagcagcagcagcagcaacaccaccagcaacagcaacagcaggcacAGGAAcagcatcagcaacagcaggtgcatgcccagcagcaacagcagcagcagcaaatcaACGCTGCCCTGTTGACGCAGCACGGAGTGCCCAGCGGAAGTGTTTCCCTATCCGGGCAATTGCTTAGCTCCTCGgccagcggcagcagcggaAGTTCAGTCGGCGGACAGCAGGCTCCACAGACGCCATCCGGTTTGCAGCCGACGCCACGCAAGTCTCGACTAAAGCGCTCCAAATCCCCGGACCTGCCATCGGGCGGAGGAGCAGGAAGCTCTGGAGGCTCGAGTAGCAGCTCATCGCAGCAGCAACCGCAGCCGgcgcaccaccaccacccgcAGACCATTCTCATACAGGGCCAAAATCCAAACTCCATTGTGAGCCTTCAGCAGACGGCCGACGGCAATTATATACCAGTGTCAGGAACAGGCGACGATTCAGACGCCGAGGACCACGATCACGACCACGAGCACGGACACGGGCACGGACACGGAGGACATCCGCACGGACACGGGCACAGCCACGATCACAGTCACGATCACGAGCACGAGAACAAGCCGAATAAGATCTGCAAGACCGAGCAATCGGTGGCCTCGCCGGCGTCCAATTCATCCAGCGCCTCGAACAATGCAGCGGGCGTGAGCGGCGTGACCTCCACCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAagattcaaaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGATATAGACAATCATCTGGCTCAGCAGATCCATCGGCTTGATCAGTCCCCCATGCACTCGATATCGCATCACCATACAGGCGATGAAAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTGATCGAGGCCAAGCACCTGGCAGCTGCCCAGCAGCATGCCCTTAGCCaggcccagcagcaacatgcccATCACCAGgcccaccagcagcagcagcaccaacaacaccagcaacagcagcagcaacaacagcagcagcagcagcaacatctccATGCACAGCAGCTGTTGGCCCAGAgtcagttgcagcagcaacagcagcagcagcagcaacaccaccagcagcaacaacaggcaGCTcaagccgcagcagcagctggagtgCATGGCCAGCATGGGGGACATGTGACGCATGCCGATATCGGCGGTGCCACAGTCATGGAGATTGATCCGAGCCAGATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCGGGACATATGGACATGTACAACTCGGACACGAGCGAGGATTCGATGATGATCGCCAACGGCTCGCCGCACGATCAGAAGGAGCCGCACTATACGAATTTGGATCAGCAGCACGGCATGGGTGGCAGCGTTTGCGGCCCGGGGCCCGGCGGTGCTGGTGGCGGTGGGGGCATGAGTGGTGGGGCTGGCTCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCTCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAGTGCCTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCAAACAAAGCATCAAAGGCCTTTGGCATCCCCTCCTCGACGCTCTACAAGATTGCCCGGCGCGAAGGCATCCGCCTTGCGGCGCCCTTTAATGCCGCCCCAACCACGTGGACGCCCGAGGACCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACGTCGGTCCAGAAGGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAACGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGCGGCAAATACGACGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACTGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGtTGCATATGTTACAGCAACAGTTCCCGTACAGCCCGTCGCCGCATCCACCAACGCCGCAGCACCACAGCACGCCGCAGCATCACAGTACGCCGCAGCAGGGACCGCCGACGCCCCAGCACATGCAGCAACACGTAGTTCacatgcaacagcaacagcagcagtcgcCCCATCCGGGCCATCATCCGCAGCACATGCAGCAGGATGTGGTTACATCGAGCAGTCAGGTGGTGcacagccagcagcagcagcagcttcagCAGATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- MHPFLTLHPFLLACSSVSGACHLHLQLEKNSFIYSKDSSSPSPYLGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPSLEQQQQQQHHQQQQQQAQEQHQQQQVHAQQQQQQQQINAALLTQHGVPSGSVSLSGQLLSSSASGSSGSSVGGQQAPQTPSGLQPTPRKSRLKRSKSPDLPSGGGAGSSGGSSSSSSQQQPQPAHHHHPQTILIQGQNPNSIVSLQQTADGNYIPVSGTGDDSDAEDHDHDHEHGHGHGHGGHPHGHGHSHDHSHDHEHENKPNKICKTEQSVASPASNSSSASNNAAGVSGVTSTGQAIVTQIVVARDGKDSKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAQQHALSQAQQQHAHHQAHQQQQHQQHQQQQQQQQQQQQQHLHAQQLLAQSQLQQQQQQQQQHHQQQQQAAQAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGMGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASSIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQSALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPQQGPPTPQHMQQHVVHMQQQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00578452;
- 80% Identity
- -