Dpse017545.2
Basic Information
- Insect
- Drosophila pseudotakahashii
- Gene Symbol
- retn
- Assembly
- GCA_035046095.1
- Location
- JAWNOE010000247.1:14198262-14211913[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-26 1.1e-22 80.6 0.0 2 89 305 390 304 390 0.96 2 2 5.6 1.4e+04 -3.1 0.1 10 38 542 575 533 585 0.55
Sequence Information
- Coding Sequence
- ATGGGCAAAGGAGTACTAAAGCCGAAGACGCAGTCGCAGTTGGTGACTTCAACACTCTCGACCATGCGTGGCGGACTTCTTGGCAAAGAGTCACGGCTGGCAGAGTCACATGGTGATCGAACGGACGACGAGATGCGCGACTGCGACTCCGTGGATGGAGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCAGCCCGCTTAAGTCACACAGTTTCCGGCGGAGGAGGGAACTTCGCCAGTCCCGAGCCACAGACCGAGTTGCCCCTGAGCCATCACCATCAACTGCCGCCAAATCATCCGCTGAACGCTCTGGGCAGCTTCATGGGCATCGGCGGTCTACACAGCATTCCAAATCTGCAGCACAGCGACGTGCTCGAGAAGCTCAAGATGCAGGTGCGCGACATGAAGGTGGGCCTGATGGAACAGGATTACGCAGCTGCAGCTCATGCCGCTGCTTTCGGGGCCAACATGCTGCCCACGACCATCAGCTCGGGATTCCCACTGCCCCACAATTCGGTggctgcggcggcggcggctgcctCCTTCGGCCACGTGACCTCGGCGCCCAGTGGTGGAAATGGGAGCAGCTACAACGgaggcaccaccaccaccccaaGCTCCAATCAGGCGGCCACCAATggaggcggcagcagcagtggACCAGGAGGAACCGGAGGATcaggcggtggcggcggcggcggcggaggagcaggTGCCCACCAGTTCTCGTTTGCATCCCCCACAGCAGCGCCGAGCGGCAAAGAAGCCCGCCACTTTGCAGCCAATTCCGCATCCAACTCGTCGACGTCCAGCGAGGCCTCCAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTTCAAACAAGTCAGACAGCTCTATGAAATCAATGATGACCCCAAACGCAAAGAGTTCCTGGACGATTTGTTCTCGTTTATGCAAAAGCGCGGTACGCCGATCAATCGGCTGCCGATTATGGCCAAATCGGTGCTGGATCTATACGAGCTGTACAATCTGGTGATAGCCCGCGGCGGCCTGGTGGATGTTATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCATCTGCCGTCGAGCATCACCAGTGCCGCCTTCACCCTGCGCACCCAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAGAAGAACCTCAGCACACCGGCGGAGCTGCAGGCGGCCATCGATGGGAATCGCCGGGAAGGACGTCGCTCCAGCTACGGGCAATACGAGGCCATGCACAGTCAGATGCCAATGACGCCCATTTCGCGACCTTCTCTCCCGGGTGGCATGCAGCAAATGTCGCCTCTGGCTCTGGTCACCCATGCCGCCGTGGCCAACAATCAGCAGGCTCaggctgccgccgccgctgcagcAGCCCATCATCGCCTGATGGGAGCCCCGGCCTTTGGCCAGATGCCCAATTTGGTCAAGCAGGAGATCGAGAGCCGGATGATGGAGTATCTGCAGCTGATCCAGGCCAAGAAGGAGCAGGGCATGCCACCCGTGCTGGGCGGCAATCAtccccaccagcagcagcagcacccacagcagcagcagcaacatcagcagcagcaacaccagcagcagcaacatctcctgcagcagcagcagcgacagcggTCGCAGAGCCCGGACTTGAGCAAGCACGAGGCACTCAGTGCTCAGGTGGCTCTGTGGCACATgtaccacaacaacaacagtccACCGGGATCGGCACACACCTCGCCGCAGCAACGCGAAGCCCTGAACCTGTCCGACTCGCCGCCAAATCTCACAAACATTAAAAGGGAACGCGAACGGGAACCCACGCCAGAGCCCGTGGACCAGGACGACCAGCCCCACCAGCCGCCTCCAGCCAAGCGCGTGGGCAGTGGCCTCCTGCCACCCGGTTTCCCCGCCAACTTCTACCTGAATCCCCACAACATGGCCGCcgtggcagcggcggcgggaTTCCATCACCCGTCCATGGGCCACCAGCAGCAGGATGCCGCCTCCGAGGGCGAGCCGGAGGACGATTACGCCCACGGCGAGCACAATACCACGGGCAACTCCTCGTCCATGCACGATGACAGCGAGCCGCAGCAGATGAACgggcatcatcatcaccaccaccaccagagcCACCAGCTGGACAAATCCGATGACTCGGCCATTGAGAACTCCCCGACAACCTcatccaccaccaccactggCGGTGGGTCGGTGGGTCATCGCCACAGCTCACCCGTTTCCACCAAGAAGAAGGGCGGCGTTAAGACCCAGAGCGGAGGAAAGGATGCGCCGGCCGAGGACAAGGATACAGGCTCCACTGGCAAGCTCAATCCCCTCGAGACGCTGAGCCTGCTGTCCGGCATGCAGTTTCAAGTGGCACGTAATGGCACTGGCGATAACGGCGAACCGCAGCTAATTGTCAATCTGGAGCTCAATGGCGTCAAGTACTCGGGCGTGCTGGTGGCCAATGTGCCGCTGTCCCAGGTCGAAACCAGGACGAGCTCACCCTGCCACCCAGCAGAATCAGCCGGaaacgaggaggaggacgagcaTGACGAGGAGGAGCCACCGAAAGCTGCTGAAGAGGATTCGGAATGCCATCGATCGCCAGTTAAGCAGGAGCGCGAGGATGCCGACCAGGACATGGATGGCAGCGAGGTCCTTGTGAACGGCGGTGGCTTGGAAGGggctggtggtgctgctctCCCCGTCCCCCTGCTCAAGGACGCCGTGGTCAGCTAG
- Protein Sequence
- MGKGVLKPKTQSQLVTSTLSTMRGGLLGKESRLAESHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVSGGGGNFASPEPQTELPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSGFPLPHNSVAAAAAAASFGHVTSAPSGGNGSSYNGGTTTTPSSNQAATNGGGSSSGPGGTGGSGGGGGGGGGAGAHQFSFASPTAAPSGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHSQMPMTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGGNHPHQQQQHPQQQQQHQQQQHQQQQHLLQQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVDQDDQPHQPPPAKRVGSGLLPPGFPANFYLNPHNMAAVAAAAGFHHPSMGHQQQDAASEGEPEDDYAHGEHNTTGNSSSMHDDSEPQQMNGHHHHHHHQSHQLDKSDDSAIENSPTTSSTTTTGGGSVGHRHSSPVSTKKKGGVKTQSGGKDAPAEDKDTGSTGKLNPLETLSLLSGMQFQVARNGTGDNGEPQLIVNLELNGVKYSGVLVANVPLSQVETRTSSPCHPAESAGNEEEDEHDEEEPPKAAEEDSECHRSPVKQEREDADQDMDGSEVLVNGGGLEGAGGAALPVPLLKDAVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00527091;
- 90% Identity
- iTF_00505186;
- 80% Identity
- -