g2649.t1
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- SMARCC2
- Assembly
- GCA_009870125.2
- Location
- CM020868.1:21353623-21358083[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.2 1.3e+04 -3.5 0.1 35 43 204 212 202 213 0.82 2 2 1.1e-14 1.5e-11 44.3 0.2 3 44 653 694 651 696 0.95
Sequence Information
- Coding Sequence
- ATGAACACACTGGGCCCCAAGAAGGACGGAAGTCCGAATATTGACTTCTTTCAGTCGTCAGAGACGCTGCAGGGCTTCGAATCAATCAGGCAATGGCTGCAAAAGAATTGTAAAAAGTACCTGGCGCACAGCTCGGAGCCCATTACCAAGGAATCCCTGGCTCAATTGCTTATACAATTTCTGCAATATGTGGAGGCGAAGCTGGGCAAAAATTCGGCCGAGCCGCCGGCGACCAGAATTCCGATGCGTTGCTTTCTGGACTTTAAGAACGGCGGAGGTCTGTGCATCATCTTCTCCACGATGTTCCGATTCCGCGCGGAGCAGCGGGGAAAGAAGTTTGACTTTTCCATTGGCAAGAATCCCACGAGGAAGGATCCCAACATTCAGCTGCTGATCGAGATCGAGCAGGCTCTGGTGGAGGCGGATCTATACCGCATACCCTACATCTATATAAGGCCGGAGATCGAGAAGGGTTTCGAGGGACGGCTGCGCGAGATTCTCGACAATCGGAGGGTGGAAATCGTCACCGACGAGGAGGATGCCACGCACATTGTCTATCCCATTGTGGATCCGCATCCGGACGAGTATGCACGTCCCATTTTCAAGCGTGGCAGTCATGTGATGCTGCATTGGTACTACTTTCCCGAATCCTATGATTCGTGGACGGTCAACAGCTTCGATTTGCCGGAGAATATTCCCGAAAATCCGGAATCTCCGGCTGAGAGGTGGCGCGTCTCGGCCTCCTGGATCCTCGACTTGGAGCAGTACAACGAATGGATGGCCGAGGAGGACTATGAGGTGGATGAGCAGGGCAAGAAGAAGACCCACAAGCAGCGCATGTCCATCGACGACATCATGTCCTTTGGCGATGAAAAGAAAAagcccagcaccagcactgGAAAGCAGAAGCGACGTCGCTCGCCCTCGCCCACAACATCCACATCGAAGCCCGGCAAGCGCAAGCGTTCCCCGGCCGTGATTCACAAGAAAACCAGAAACGATGAGGAAGATGAAGATCTGACGCGGGACCTGGATGATCCGCCGGCCGAACCGAATGTTCAGGAGGTGCACAAGGCCAGTACGGCCTTGCAATCGACTTCCAGTCCAGCACCGGGTAGCAAATCGCGTGGCGACAACGATATGATGCCCATCAAGGGTGGAACGATGACGGATCTGGACGATGAGATGACTGGGGGGAGTGCTGCCCAGGCACTGTCCACAGGCGATGGGGACAACTCGCAGACGGGCAAGACgagcgacaacagcaacacccaGGAGTTCTCCTCGTCCGTCAAGGAGGATATGGAGGATAATGTGACCGAGCAGACGCACCACATCATTGTGCCCTCGTATTCGGCATGGTTTGACTACAACTCCATCCACGTGATCGAGAAGCGCGCGATGCCAGAGTTCTttaacagcaaaaacaaatccaAGACCCCAGAGATCTACATGGCCTATAGAAACTTTATGATAGATACCTACAGACTCAATCCCACGGAGTACTTGACCAGCACCGCCTGTAGACGCAATCTAGCGGGAGATGTGTGTGCCATTATGCGGGTTCATGCCTTCCTGGAGCAGTGGGGATTGATCAACTACCAGATCGATGCAGATCTGCGTCCCACGCCCATGGGACCGCCGCCTACCTCGCATTTCCATATCCTGTCCGACACGCCCTCGGGCTTGCAGGCCATTAATCCGCAAAAAACTCAGCAGCCATCGGCCGCCAAGACGCTGCTGGATCTCGACAAGAAGCCGCTGGGCAAGGATGGTAGCTTAGAGAGCTTGGGCGGCGACAAGAGCGGCACCCTTGGCGCCATCAAGACGGAGGCCTTGGAGAATGGAGCCGCCAGTGGATTGAGCTCTGGCGTGAGCCAATTTGGCTTGAAGCTGGATCAGTATGCCAAGAAGCCGGCTGCCATGAGGAACCGCACGGCGGCCAGCATGTCCAGGGAGTGGACCGACCAGGAGACACTGCTTCTGCTCGAGGGTCTGGAGATGCACAAGGACGACTGGAACAAGGTGTGCGAGCATGTGGGCTCCCGCACCCAGGACGagtgcattttgcatttcctTCGGCTGCCCATCGAAGACCCCTATCTGGAGGACGATGGCGGCTTTCTGGGACCCCTGGGCTGTCAGCCCATCCCATTCAGCAAGAGCGGCAATCCCATTATGTCCACGGTGGCATTTTTAGCCTCTGTGGTGGATCCCCGGGtggccgccgcagccgccaaGGCAGCCATGGAGGAATTTGCAGCCATAAAGGACGAGGTGCCAGCCACCATTATGGACATCCATATAAAGAGCGTGAAGAAGGCCTCCGCCGGCGGCAAGTTCAATCCGAACTTTGGTTTGTCCAACAGCGGGATTGCGGGCACTGGCAACGACAAGGAGGATGAGGAGAGCAAGGATGGTAGCAGCGGCTCGGCCACAGCTGCCGGTGGCGCaggcggaggagcaggaagTGATGAGGAAATGAAGGATCTTACCAAGAAAGACGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATACCAAGAcgaacacaaacacagactCTAGttccacatcatcatcatcatcatcgacaGCCACAAGCAACACGAACACTACTACAGATAATAAGAAACCGAAAGATTCGTCGGATAAAGCCAGCAAAACagacaaatcaaataaatccTCACCCACAGacccaacagcagccgcatcagcagcagtcgtccccagtggcagtggagcaGGCGGAGTGGATGTTGACATCAAAACGGAGGAGAACAGTGGCGACGGGGAGACGAAGGATGGCAGCGATGGCTCCAAGGATGGCTCGAGTGGCCAAGGCAGCAACAAGGAGGGAGCCTTCAGTGAGAACAACATGcagacggcagcagcagccgctctGGCCTCGGCGGCCGTCAAGGCCAAGCATTTGGCTGCCCTCGAGGAGCGCAAGATCAAGTCTTTGGTGGCCCTGCTGGTCGAGACGCAAATGAAGAAGCTGGAGATCAAACTGAGGCACTTtgaggagctggaggccacCATGGAGAGGGAGCGCGAGGGCCTGGAGTACCAGCGACAGCAGCTGATTACAGAGCGTCAGCAGTTCCATTTGGAGCAGTTGAAGGCCGCCGAGTTCCGGGCCCGCCAGCAGGCGCATCATCGtctgcagcaggagctgcagggCCAGGCAGCCGCTGCCGGTACCATGAtcctgcaacagcagcagcagcagcaacaacagccgaCGCCGCCaccgcagcagccacaacagcagcagccactgccacagcatctgcatgcgcagcagcagcagccactgccgcCCCATCAGACGCAGGTGCAGCCCCAGCCGCTGGCCGCACCATCGGCACAGCATCAGCCCCTACCGCCGCACATAGCAGCTGTGGGCGTGGGTCCGCCGCCAAATGGGGCGTCTTTTGCAGCGCCGCCCATGGCGACGGCAGCTACTGGTGGAGCACCTCCACCAGGAGGCGGAATACCTGCCGTTTTGGCCACTGCCAGCGAacaagcaggagcagcggcagcagtcgccgcagcagcagccgcagcggcggcGCAACCTCAGGCACCCACAGCGATGGATACCACACCGCCAATCAGTGCACCTGTTGCCGAGGCCCCAAGTGCACCGGGGGGACCGGTGGTGTTGCCGCCCGCTGTCTCAAGCATTCCTCCGGCCAGCGCTGTGGCTCCTGTGGCTGCTCCAGCCGTCGCTCCTCCATCTTAA
- Protein Sequence
- MNTLGPKKDGSPNIDFFQSSETLQGFESIRQWLQKNCKKYLAHSSEPITKESLAQLLIQFLQYVEAKLGKNSAEPPATRIPMRCFLDFKNGGGLCIIFSTMFRFRAEQRGKKFDFSIGKNPTRKDPNIQLLIEIEQALVEADLYRIPYIYIRPEIEKGFEGRLREILDNRRVEIVTDEEDATHIVYPIVDPHPDEYARPIFKRGSHVMLHWYYFPESYDSWTVNSFDLPENIPENPESPAERWRVSASWILDLEQYNEWMAEEDYEVDEQGKKKTHKQRMSIDDIMSFGDEKKKPSTSTGKQKRRRSPSPTTSTSKPGKRKRSPAVIHKKTRNDEEDEDLTRDLDDPPAEPNVQEVHKASTALQSTSSPAPGSKSRGDNDMMPIKGGTMTDLDDEMTGGSAAQALSTGDGDNSQTGKTSDNSNTQEFSSSVKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDADLRPTPMGPPPTSHFHILSDTPSGLQAINPQKTQQPSAAKTLLDLDKKPLGKDGSLESLGGDKSGTLGAIKTEALENGAASGLSSGVSQFGLKLDQYAKKPAAMRNRTAASMSREWTDQETLLLLEGLEMHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDDGGFLGPLGCQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPATIMDIHIKSVKKASAGGKFNPNFGLSNSGIAGTGNDKEDEESKDGSSGSATAAGGAGGGAGSDEEMKDLTKKDDDAKSKDKTKSDTKTNTNTDSSSTSSSSSSTATSNTNTTTDNKKPKDSSDKASKTDKSNKSSPTDPTAAASAAVVPSGSGAGGVDVDIKTEENSGDGETKDGSDGSKDGSSGQGSNKEGAFSENNMQTAAAAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRLQQELQGQAAAAGTMILQQQQQQQQQPTPPPQQPQQQQPLPQHLHAQQQQPLPPHQTQVQPQPLAAPSAQHQPLPPHIAAVGVGPPPNGASFAAPPMATAATGGAPPPGGGIPAVLATASEQAGAAAAVAAAAAAAAAQPQAPTAMDTTPPISAPVAEAPSAPGGPVVLPPAVSSIPPASAVAPVAAPAVAPPS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560967;
- 90% Identity
- iTF_00487229;
- 80% Identity
- -