Dpec006544.1
Basic Information
- Insect
- Drosophila pectinifera
- Gene Symbol
- topi
- Assembly
- GCA_008042775.1
- Location
- VNKC01001613.1:1055-3927[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.8 5.5e+02 1.2 0.7 2 19 148 164 147 166 0.88 2 11 9.2e-06 0.00065 19.8 1.6 2 23 253 274 253 274 0.97 3 11 0.16 11 6.5 0.1 2 13 300 311 299 321 0.85 4 11 0.0061 0.43 11.0 0.0 2 23 395 416 394 416 0.96 5 11 0.0016 0.12 12.8 0.3 1 20 463 482 463 487 0.93 6 11 7.4 5.2e+02 1.3 0.1 2 16 502 516 501 524 0.81 7 11 4.8e-07 3.4e-05 23.9 1.9 1 23 545 567 545 567 0.95 8 11 0.00034 0.024 14.9 1.0 1 23 573 598 573 598 0.96 9 11 0.59 42 4.7 1.8 1 23 604 626 604 626 0.88 10 11 3.6e-08 2.5e-06 27.4 0.4 1 23 632 654 632 654 0.99 11 11 0.0013 0.092 13.1 2.5 1 23 660 683 660 683 0.96
Sequence Information
- Coding Sequence
- ATGGATCCCGGAGATTTGTCAAGCATCCCGACGGAATGTGAGCATCAGGCGGGGGAATATACGCTGGCCGAGATCGAGGTCGATATGGAGTCGCAGCTGACTCCCAATGACCTGGAGCCCGGTGCCACGGTGCTGCTATCCATCGAGGGCGATGGAGACGGAGAGCGCATTATGAGCCATGATGAGCTATCCAAGTGGTTTGTGGTGGAGCCCTCCAGCCCCGCACCAATGCCCACAGATGTGGTGGTGCAGCGCACCTTGGAAGATCCTGCTCTTAAGCAGATACTCCAGGAGACCGACGGCAAGCCGGACTTTGATCCCGAGGCGGAGCAGATGAAGATTCGCAGCTTTCTGGCAGGCGTCACCAACAGCAAGATGACCACAGAGCAGTCGGTATTTCAAGGATATCGGCCCAACACAACGGGCTTTAGCAGCCGAACGAAGTGCCCCGAATGCCTTGGCACTTTCGATGCCGCCTCGTTTCAAAGTCACTCTTGTGGCGTCGAGGTCGATCggaagccgaaaccgaaacctaAGCCTGTCATCGAAGGGTTGGTTGAGAAGCAGGCGGAGAAGCTACCGGCAGTAGCCACTGCGGAACCCGAGATTCCCGCCCCACCCAGGAAACCAAACAGTGTGCGTGTAATCCAGGAGAACCAGATCCGCCTGCGTCGCTACTTGAATGACGAGCTGAAGTACGATATAACCACCGGTGTGGATGGCTCGCGCAGCCGTAAATCAAGCAAGGGGCCCAACGAGTGCACCAAGTGTGACCGCAAGTTCGTTCACGCCTCCGGATTAGTGCGCCACATGGAGAAGCATGCTCTGGACCTGATACCCTCGCAGGCCAACCCGCAGCCGCCCACTCCTTTGGCCGCTGGACTCATGGCCGTAGTGAAATGCAACTTCTGTGGTCGCGTCTTTTACGATCCGCTGGTGGCATTGGAGCACGGCCATGTTCACTTCCTCAAggaggaccagcagcagcagcagaagccgaGCAAAGCGGCAGTTCCTAATACAGCGGAGCCCAAGTATGCCAACAATCAGAATTTCGAAGAGTATGTGCTGGAGGGTGAAGTCCTGCTGGGCGAATCTTGCTTGGAAACTTGGAAGCTGGTGATCAAGCAGTGCCGGCTGGAAGATGATTTGTTCTCCAGCTTGATCCTTGGCAGCGTCCTGCAGTGCGAGTTTTGTGAATACGTGTTCGCGGATATCACAGATCTGCTCGCCCATTCGGCCACTCACTTGGCGAAGCGGCGCTTCGAATGCACCGCCTGCGACATTAAGATGAGCACGGCCAAGGAGGCCAGACTACATTTCGAGACGGACTGCATATTCGTGCGCGAGGCGATGAAGTCGCAAAGCGTTTCGGTCAGTCGCTACTTTGTATGCAATGTGTGCGAGCTGAAGTTTGCCAACTCGGAGCTGCTACAGGAGCATCGCTACGCCTACAATCACTACTTCCCGCGTCTCAGCGCGAATGGGacgcgcctgctgctgccctgcGAGTTCTGCGATGTCTTCTTCGAGTCCGCCCGTGAGGTCCAGCCGCACAACGAGGAGAAGCATCTGAGCAAGAAGAAGCGAGAGAAGGAGTCGCGCAGCACGGCCAGTGGTCGTCAGCGCCAGTATCTGTGCGACATCTGCGGCAAGTCGTACACCCAATCGAGCCACCTATGGCAACATCTGCGCTTTCACCAGGGTGTGAAGCCGTTCATATGCCCGGAGGAGAAGTGTGACCGTAAGTTCACCATCCGACCGGACCTCAACGACCACATCCGCAAGTGCCACACGGGCGAGCGGCCGTTTCACTGTTTGGTGTGCGGCAAGCGCTTCCTCACCGGCTCCGTCTTCTATCAGCACCGCCTCATCCATCGCGGCGAGCGGCGCTACGAGTGTGAGGAGTGTGGCAAGCGATTCTACCGCGCCGATGCTCTCAAGAACCACCAGCGTATCCACACCGGCGAGAAGCCGTTCAGCTGCCTCTTCTGCACCAAGACCTTCCGCCAGCGCGGGGATCGCGACAAGCACATGCGGGCCCGTCACTCCCACCTCGATGCCAATTCGCGCCTCAtgatgcagatgcagaagTTCCAGCTGGAGTCAGCTGCCGCCGCTAAGGCGAAGGGCAAGAAGCCCCCGTCTGGGGTGGCGGTGGCTGCCATTAGCAGTCCTACCCCGGAGGTGGCTTCGGAGCCcgaagaggagcagcagtaTCCCGTTAAACCAGAACAGGACGAGGACATAGAGTACGTGCCAATAAACGAACTGACTCCCAACTATTTTGTAGTCGAGGAGTACGTGCAGTCTGTGCCTACGGAGGAGGGCGACTGCTCCCTGGAGAATCCGGGCTTCGTCAGGGAGAAAGGAAACATCACCATGGCGGGGGAAGGCTTCACCATAGAAGGGGAGGGCTGCTccctggaggaggagggctgcaccatggaggaggaggaacagcAGATAATTCTGTACGAGACACAGCCAGGACAGGATATGATGAACATAAACGAACAGGAACCGGGACAGGATCTAATCACTTTCGACTATCAGGAGCCGGATCAGCAGCCGATGCCGGATGAGGGCTACGTTTCAATGTTACAAGGAGGCGGCGACAATGCCAGGGTTGTGGTTGTGCAGAACAATCCAACTCAGCCCATGTTTTCCAATTCATAcatgtaa
- Protein Sequence
- MDPGDLSSIPTECEHQAGEYTLAEIEVDMESQLTPNDLEPGATVLLSIEGDGDGERIMSHDELSKWFVVEPSSPAPMPTDVVVQRTLEDPALKQILQETDGKPDFDPEAEQMKIRSFLAGVTNSKMTTEQSVFQGYRPNTTGFSSRTKCPECLGTFDAASFQSHSCGVEVDRKPKPKPKPVIEGLVEKQAEKLPAVATAEPEIPAPPRKPNSVRVIQENQIRLRRYLNDELKYDITTGVDGSRSRKSSKGPNECTKCDRKFVHASGLVRHMEKHALDLIPSQANPQPPTPLAAGLMAVVKCNFCGRVFYDPLVALEHGHVHFLKEDQQQQQKPSKAAVPNTAEPKYANNQNFEEYVLEGEVLLGESCLETWKLVIKQCRLEDDLFSSLILGSVLQCEFCEYVFADITDLLAHSATHLAKRRFECTACDIKMSTAKEARLHFETDCIFVREAMKSQSVSVSRYFVCNVCELKFANSELLQEHRYAYNHYFPRLSANGTRLLLPCEFCDVFFESAREVQPHNEEKHLSKKKREKESRSTASGRQRQYLCDICGKSYTQSSHLWQHLRFHQGVKPFICPEEKCDRKFTIRPDLNDHIRKCHTGERPFHCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPFSCLFCTKTFRQRGDRDKHMRARHSHLDANSRLMMQMQKFQLESAAAAKAKGKKPPSGVAVAAISSPTPEVASEPEEEQQYPVKPEQDEDIEYVPINELTPNYFVVEEYVQSVPTEEGDCSLENPGFVREKGNITMAGEGFTIEGEGCSLEEEGCTMEEEEQQIILYETQPGQDMMNINEQEPGQDLITFDYQEPDQQPMPDEGYVSMLQGGGDNARVVVVQNNPTQPMFSNSYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00606512; iTF_00590419; iTF_00480344; iTF_00531832; iTF_00609342;
- 90% Identity
- -
- 80% Identity
- -