Dtri014839.1
Basic Information
- Insect
- Drosophila triauraria
- Gene Symbol
- topi
- Assembly
- GCA_014170255.2
- Location
- CM024337.1:21781434-21784264[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.72 55 4.5 0.7 2 19 148 164 147 166 0.91 2 11 1.2e-05 0.00091 19.5 1.3 2 23 253 274 253 274 0.97 3 11 0.044 3.4 8.3 0.1 2 15 300 313 299 321 0.77 4 11 0.019 1.4 9.5 0.1 2 23 398 419 397 419 0.94 5 11 0.0016 0.13 12.8 0.3 1 20 466 485 466 490 0.93 6 11 7.4 5.7e+02 1.3 0.1 2 16 505 519 504 527 0.81 7 11 4.8e-07 3.7e-05 23.9 1.9 1 23 548 570 548 570 0.95 8 11 0.00019 0.015 15.7 1.0 1 23 576 601 576 601 0.97 9 11 0.59 45 4.7 1.8 1 23 607 629 607 629 0.88 10 11 3.6e-08 2.8e-06 27.4 0.4 1 23 635 657 635 657 0.99 11 11 0.0013 0.1 13.1 2.5 1 23 663 686 663 686 0.96
Sequence Information
- Coding Sequence
- ATGGACCCCGGAGATTTGTCGAATATCCAGACGGGTGGTGAGCAGCAGGCTGGGGAATATACCCTGGCCGAGATCGAGGTCGATATGGAGTCGCAGCTGACTCCCAATGACCTGGAGCCCGGTGCCACGGTGCTGCTATCCATCGAGGGTGATGGCGATGGAGAGCGCATTATGAGCCACGAAGAGCTATCCAAGTGGTTTGTGGTGGAGCCCTCAAGCCCCGCACCCATGCCCACCGATGTGGTGGTGCAGCGCACCCTGGAAGATCCTGCTCTCAAGCAGATCCTCCAGGAGACCGACGGCAAGCCGGACTTTGATCCCCAGGCGGAGCAGATGAAGATACGCAGCTTTCTGGCAGGCGTCACCAACAGCAAGATGACCACGGAGCAGTCGGTCTTCCAAGGGTATCGCCCCAACACCGTAGGCTTTAGCAGCCGAATGAAGTGCCCCGATTGCCAAGGCACTTTTGATGCCGCCTCGTTTCAGAGTCACTCCTGCGGCGGCGAGGCTGAACGGAAGCCGAAACCAAAGCCTAAGCCCGTTGTCGACACCCCAGTTGAGAAGCCGGTAGAGAAGCCACCGCCAGTAGCCACTGCAAAGCCTGAGCCGCCCGCTCCGCCCCTCAAGCCGAACAGCTTGCGAGTGATCCAGGAGAACCAGATCCGGCTGCGTCGCTACTTGAATGATGAGCTGAAGTACGACGTAACCAACGGCGTGGATGGCACGCGCGGCCGTAAGTCGAGCAAGGGGCCCAACGAGTGCACCCAGTGTGACCGCAAGTTCGTTCACGCCTCCGGGTTGGTGCGCCACATGGAGAAGCACGCCCTGGACCTGATACCCTCGCCGACCAACCCACAACCGGCCACGCCTCTGTCCGCTGGACTGATGGCCGTTGTGAAGTGCAACGTGTGTGGCCGCGTCTTTTACGATCCGCAGGTGGCATTAGAGCACGGCCACGTTCACTTCCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCGGATCCTAAGGTCGCCACCGATGAGAACTTCACAAATTTTGTACTGGAGGCCGAGGTGCAGATGAGCGAAACTAGCTTGGTGACTGCCAAGTTGCAGCTCATGCAGTGCCGCCTGGAAGATGATATGTTCACTAGCCTGGTTCTTGGCAGCGTCCTCCAGTGCGAGTTTTGCGAATACCTGTTCTCGGATATCTCAGACCTGCTCGCCCATTCGGGCACTCACCTGGCGAAGCGGCGCTTCGAGTGCACCGCCTGCGACATTACCATGAGCACGGCCAAGGAGGCCAGGCTCCATTTCGAGACGGACTGCGTCTTCGCGCGCGAGGCCATGAAGTCGCAAAGCGTTTCGGTCGGCCGCTACTTTGTGTGCAATGTCTGCGAGCTGAAGTTTGCCAACTCGGAGCTGCTGCAGGAGCATCGCTACGCCTACAATCACTACTTCCCGCGGCTCAGCGGGAAGGGGTCGCGCCTGCTGCTGCCCTGTGAGTTCTGCGATGTGTTCTTCGAGTCCGCCCGCGAGGTCCAGCCGCACAACGAGGAGAAGCATCTGAGCAAGAAGAAGCGGGAGAAGGAGACGCGCAGCACGGCCAGCGGTCGCCAGCGCCAGTATCTGTGCGACATCTGCGGCAAGTCTTACACCCAGTCGAGCCACCTGTGGCAGCACCTGCGCTTCCACCAGGGTGTGAAGCCCTTCGTCTGCCCGGAGGAGAAGTGTGACCGCAAGTTCACCATCCGCCCAGATCTCAACGACCACATCCGCAAGTGCCACACGGGCGAGCGGCCTTTTCACTGTCTGGTTTGTGGCAAGCGCTTCCTCACCGGTTCCGTCTTCTACCAGCACCGCCTCATCCATCGCGGCGAGCGGCGCTACGAGTGCGAGGAGTGCGGCAAGCGCTTCTATCGCGCCGATGCTCTCAAGAACCACCAGCGCATCCACACCGGCGAGAAGCCCTTCAGCTGCCTCTTCTGCACCAAGACCTTCCGCCAGCGCGGCGATCGCGACAAACACATGCGGGCCCGTCACTCCCACCTCGATGCCAACTCACGCCTCATGATGCAGATGCAGAAGTTCCAGCTGGAGTCGGCCGCTGCCGCCAAGGCCAAGGGCAAGAAGCCCCCGTCTGGGGTGGCGCTAGCTGCCAGTAGCAGTCCTTCCCAGGCGGTGGCTTCGGAGCCTGAGGAGGCAGGAGCTCCAGACGAGGAGCTGCAGTTTCCCGTTAAGAGCGAACTGACTACCGACTATTACGTGGTCCAGGAGGGGGGCGACTGCTCCCTGGAGAATTCGGGTATCGCCAGGAAGGAAGAAGACATCACTATGGATGGAGACGGCTTTACCATGGAAGGAGAAAGCTGCGCCCTGGAAGAGGAGGGCTGCACCATGGAGGAGGAGGAACAGCAGATAATTCTGTACGAGACACAGCCAGGGCGCGATATGATGAACTTGGACGAGCAGGAACCGGGACAGGATCTACTTACATTCAACTATGAGGAGCCTGATCAGCAGCCGATTCAGGATGAGGGATACGTTTCAATGGTACAGGGCGGGGGCGAAAATGCCAGGGTGGTGGTAGTGCAGAACAACCCAACTCAGCCGATGTTTTCCAATTCCTACATGTAA
- Protein Sequence
- MDPGDLSNIQTGGEQQAGEYTLAEIEVDMESQLTPNDLEPGATVLLSIEGDGDGERIMSHEELSKWFVVEPSSPAPMPTDVVVQRTLEDPALKQILQETDGKPDFDPQAEQMKIRSFLAGVTNSKMTTEQSVFQGYRPNTVGFSSRMKCPDCQGTFDAASFQSHSCGGEAERKPKPKPKPVVDTPVEKPVEKPPPVATAKPEPPAPPLKPNSLRVIQENQIRLRRYLNDELKYDVTNGVDGTRGRKSSKGPNECTQCDRKFVHASGLVRHMEKHALDLIPSPTNPQPATPLSAGLMAVVKCNVCGRVFYDPQVALEHGHVHFLXXXXXXXXXXXXXXXXXXXXNADPKVATDENFTNFVLEAEVQMSETSLVTAKLQLMQCRLEDDMFTSLVLGSVLQCEFCEYLFSDISDLLAHSGTHLAKRRFECTACDITMSTAKEARLHFETDCVFAREAMKSQSVSVGRYFVCNVCELKFANSELLQEHRYAYNHYFPRLSGKGSRLLLPCEFCDVFFESAREVQPHNEEKHLSKKKREKETRSTASGRQRQYLCDICGKSYTQSSHLWQHLRFHQGVKPFVCPEEKCDRKFTIRPDLNDHIRKCHTGERPFHCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPFSCLFCTKTFRQRGDRDKHMRARHSHLDANSRLMMQMQKFQLESAAAAKAKGKKPPSGVALAASSSPSQAVASEPEEAGAPDEELQFPVKSELTTDYYVVQEGGDCSLENSGIARKEEDITMDGDGFTMEGESCALEEEGCTMEEEEQQIILYETQPGRDMMNLDEQEPGQDLLTFNYEEPDQQPIQDEGYVSMVQGGGENARVVVVQNNPTQPMFSNSYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00572079;
- 90% Identity
- -
- 80% Identity
- -