Dpau010734.1
Basic Information
- Insect
- Drosophila paulistorum
- Gene Symbol
- -
- Assembly
- GCA_018152135.1
- Location
- JAECXG010000805.1:840981-844189[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.8 4.5e+02 1.7 2.5 3 17 61 75 60 76 0.88 2 13 0.0062 0.48 11.1 0.0 1 23 209 234 209 234 0.96 3 13 3.9e-05 0.003 18.0 1.9 1 23 239 262 239 262 0.96 4 13 1.4e-05 0.0011 19.4 3.6 1 23 267 289 267 289 0.98 5 13 4.9e-05 0.0038 17.7 4.1 2 23 296 317 295 317 0.97 6 13 0.00043 0.033 14.7 2.4 3 23 329 350 328 350 0.95 7 13 0.0013 0.1 13.2 0.3 1 23 356 379 356 379 0.96 8 13 0.0012 0.09 13.4 0.8 2 23 390 412 389 412 0.96 9 13 4.5e-05 0.0035 17.8 0.3 1 23 440 462 440 462 0.97 10 13 4.1e-05 0.0031 17.9 4.7 1 23 469 491 469 491 0.96 11 13 8.8e-05 0.0068 16.9 0.2 2 23 498 519 498 519 0.97 12 13 0.00049 0.038 14.5 1.4 1 23 526 548 526 548 0.99 13 13 0.00022 0.017 15.6 2.4 1 23 554 577 554 577 0.97
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCGCTTTCCATGTTTGTATGCGATTTTGAAAATGGCAACAATAATTTTTTGGACCTATTCCATCCCACATGCTGGCAAAGCGAAATGGGCCAAATACGCATGGAGTTTCTTAACTGGAATTTAAAGATATTACCGAATGATGGACTGCCTCAAAAGATTTGTAGCGATTGTTTTACAAAATTTTGTTCTTTATATACATTTCGGTTAACGTGCCAAGAGGCACAAGTAAAGCTATTAAATATCTATGAGAAAATTGATGCCAGCAGTTTGGATGATCATTCAGAAGTGGATACGGATACTGAGGAAGTTGATTTGGACTTAAACAATGATATTAATGCCACAAATGAAACAATAACAACAACAGTGACGGTTTCAACTGAAGCAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATAGAAATCTATATAAATGCGGCGAATGTGGCAGATGCAACCGAAGAATATCCTTCCGAACTGGTCATAAGCTACGCTTGCAAATTCTGTTTTAAGCCGCAAGAGAGCTTTCAACTGCAACAAATGCTTCTGGAGCACATCAGTAGCGAACATGATCCGGAGCAACCATATAATTGTCCTGAACCCGAATGTGAAGAAGCTTTCCAGGATGCCGCGTCGCGTACTGTCCACATGAAGAGTGTTCATGTGGATAAGCAATTTTCTTGTGATGTATGTGGCAAAAAGTATGGGGATCGTCAGAATTTACGACATCATGTGGAGAAATATCATTCGGACACGGATTTCGAATGCAACATGTGTGAGAAGCGCTTCTTCACAAAAAAGAGTCTTAAGTACCATATGAAATGGCATATTCCTGAACGCCAATTAAAGTGTCGGCACTGCGATCGATTGTTCATCTCATCTGTACATCTCACCAAACATATGGCCACCCACACCCAAATGGCAAGTGCCCGAAAGAGCGAACATTGTGGACTATGTGGGAAAGCCTTTATACATCTCAAGACTCTACGCTGGCATATCTATAGACAACATGGCGGAGAGAAGCCCTACAAATGTAGCAACTGTACCCAAGTCTTTGCATCGTATGCGGAAAAAAGGATACACATGCTGGAGGATCATATGGAGAATTTGACAGCCATTGAGAGAAGCGAGTGCATGCTCTGTAGACAGGTTTTTGGCAATGAACAGGACCTGGTTCACCATATGAGAAGGGAGCACTTAAAGAGTCCATCCGCTCCGGTGATTGTGAATAACAAGCGGGTTTTGCAACAAAAACGTGAACGTCAGTATTCGGGCCTGTTCCAGTGCGATAGGTGCCCCCAACGCTTCAATATGAAATCTGCTCTGGAAAGGCATGCAGAGGTGCATTCCGAAAAGGATCGTCCTCATGCCTGTGCGCACTGTTCCAAGCGATTCAAACGTGCCCAGGACATGAAATGGCACATGAAAACGCACGAAAAAGTGAAGCCCAATGTGTGTGATGTGTGTGGCAAGGCTTTTGCCTTGAAGTATGTGCTAACCCAACACAAAAGGAGTCATGAAGTTCTCGAAAAGAACTTCAAGTGCAGTGTATGCGGACGTACGTATCTCTTTGAAAAATCGCTACGTCTCCATCAGCGAGTTCACACTGGGATGACCTATTACAACTGTGACCTCTGTCAGGAACGTTTTGTTACCCATATTAAGTTAAAAACTCATATGCAAAAGGTTCATGCCCAAACACAGGCAAAGGATTCCTCATTGGATAATTTAATTAACATTGTGATTTCCTAA
- Protein Sequence
- METCRTCALSMFVCDFENGNNNFLDLFHPTCWQSEMGQIRMEFLNWNLKILPNDGLPQKICSDCFTKFCSLYTFRLTCQEAQVKLLNIYEKIDASSLDDHSEVDTDTEEVDLDLNNDINATNETITTTVTVSTEATXXXXXXXXXXXXXXXPIEIYINAANVADATEEYPSELVISYACKFCFKPQESFQLQQMLLEHISSEHDPEQPYNCPEPECEEAFQDAASRTVHMKSVHVDKQFSCDVCGKKYGDRQNLRHHVEKYHSDTDFECNMCEKRFFTKKSLKYHMKWHIPERQLKCRHCDRLFISSVHLTKHMATHTQMASARKSEHCGLCGKAFIHLKTLRWHIYRQHGGEKPYKCSNCTQVFASYAEKRIHMLEDHMENLTAIERSECMLCRQVFGNEQDLVHHMRREHLKSPSAPVIVNNKRVLQQKRERQYSGLFQCDRCPQRFNMKSALERHAEVHSEKDRPHACAHCSKRFKRAQDMKWHMKTHEKVKPNVCDVCGKAFALKYVLTQHKRSHEVLEKNFKCSVCGRTYLFEKSLRLHQRVHTGMTYYNCDLCQERFVTHIKLKTHMQKVHAQTQAKDSSLDNLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555257;
- 90% Identity
- iTF_00503421; iTF_00612239; iTF_00523855; iTF_00618577;
- 80% Identity
- -