Dpar015481.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila parthenogenetica
Gene Symbol
-
Assembly
GCA_035047505.1
Location
JAWNPM010000242.1:2027148-2034400[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.8e-05 0.0021 18.6 2.1 1 23 309 331 309 331 0.97
2 20 9.1e-06 0.00068 20.1 0.4 1 23 337 359 337 359 0.97
3 20 0.0013 0.1 13.3 0.9 1 23 365 387 365 387 0.95
4 20 1.9e-05 0.0014 19.1 3.1 1 23 393 415 393 415 0.97
5 20 4.4e-05 0.0033 18.0 4.7 1 23 421 443 421 443 0.99
6 20 8e-05 0.006 17.1 5.7 1 23 449 471 449 471 0.97
7 20 3.9e-07 2.9e-05 24.4 4.3 1 23 477 499 477 499 0.98
8 20 1.4e-07 1e-05 25.8 2.4 1 23 505 527 505 527 0.97
9 20 1.4e-05 0.001 19.5 4.5 1 23 534 556 534 556 0.97
10 20 0.00055 0.041 14.5 5.0 1 23 562 584 562 584 0.97
11 20 8.2e-05 0.0061 17.1 6.7 1 23 590 612 590 612 0.97
12 20 0.00014 0.011 16.3 6.5 1 23 618 640 618 640 0.98
13 20 1.3e-05 0.00095 19.6 4.5 1 23 646 668 646 668 0.98
14 20 9.2e-06 0.00069 20.1 8.1 1 23 674 696 674 696 0.98
15 20 7.5e-06 0.00056 20.4 7.6 1 23 702 724 702 724 0.97
16 20 8.4e-07 6.3e-05 23.4 7.7 1 23 730 752 730 752 0.98
17 20 0.00026 0.02 15.5 9.5 1 23 758 781 758 781 0.95
18 20 9.3e-05 0.007 16.9 0.9 1 23 787 809 787 809 0.98
19 20 0.001 0.076 13.7 3.4 1 23 819 841 819 841 0.97
20 20 1.2e-05 0.00087 19.8 1.6 1 23 847 870 847 870 0.96

Sequence Information

Coding Sequence
ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCATCCTCGGTGGTGACCGCTGGCGGTGGCACCACCACCATAACATTGGGCGGTGGACCGCCTCCGATATcgttatcaaataaattgattgatcATCATAACagtcataatcatcatcatcaacagcagcaacaacaacagcaacagcagcagcagcatcaacaacaacagcaacaacaacatcatcataaTAGTAAGGACGACGCTGGGAAGCAACAGCTTCAGCCGCCACACGGCTTGGAAATGTATAAAGTGAACATTGAGGATATATCACAGTTATTTACGTATCACGAGGTCTTCGGTAAAATCCATGGCGATGTGGTGAATCATGTGGCAGCGGTGCATGGCGGCAGTCAattgccaccgccaccgcaattgccgccgccaccgccgtTGCCACCGCAGACGACGCATTCTTCGGCAagcgcagcagctgcagcagcagcggcggcgtcCACAAATAATGCAGCCGTCGCTGCTGTAATGGCCTCGGccaatgcagcagcagcggctgcagcagccgcctcagcagcggcaacagcacaacaacaacagcaacaacaacaacaacagcaacaacaagcagtgACTAGCACAAATGCGGGAAGCCAGCAGGGCAGCGCCACGGTGACCACGACTAGCTCAGGTAGCAACGggaacaataataataataataacaataacagtaatgggggcagcaacaacaataataataacagtaaTAATAGTAACAattcgacaacaacaacaacaacagcaacgggtGAATTGCTAATGCCGAAAATGGAGGGCGGCATCCATGGCATCGATGGTcagtcgtcgtcatcgtcgagCGTTACATTGGCGCCGGATGGCACGCCCATTGCGACTGGTACGCATGTGTGCGATATTTGTGggaaaatgtttcaatttcGTTATCAGCTGATTGTGCACCGTCGCTACCACAGCGAGCGCAAGCCATTTATGTGTCAGGTATGCGGTCAGGGTTTTACCACATCGCAGGATTTAACACGTCATGGTAAAATCCATATTGGCGGTCCAATGTTCACCTGCATCGTTTGCTTCAATGTCTTTGCGAATAACACCAGTTTGGAGCGTCACATGAAACGGCATTCGACGGACAAGCCATTTGCCTGCACCATTTGCCAAAAGACATTCGCACGCAAAGAGCATTTGGATAATCATTTTCGTTCGCATACTGGTGAAACGCCATTTCGTTGCCAATACTGCGCCAAGACGTTTACACGCAAGGAGCACATGGTTAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCATTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGACAAACACCGCATCAGTGCGATGTCTGTGGCAAGAAATACACACGCAAGGAGCATCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGCTGTGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCACACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTCACACGCAAggagaatttattaaatcatgTGCGACAGCACACGGGAGAGTCACCGCATCGCTGCTCCTACTGCATAAAGACGTTCACACGCAAGGAGCATCTGGTGAATCATATACTCCAGCACACGGGCGAGACGCCACATCGGTGTGATTTCTGCTCCAAGACGTTCACACGCAAGGAACATTTGTTAAATCACGTGCGACAGCACACGGGAGAGTCACCGCATCGCTGTTCGTACTGCATGAAGACGTTCACACGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTCACACGCAAGGAGCATCTTACGAATCATGTGCGACAGCACACCGGCGATTCGCCGCATCGTTGCAGCTACTGCAAGAAGACCTTTACCCGTAAGGAGCATCTGACGAATCATGTACGGCTGCACACTGGAGATTCGCCCCATAAATGCGAATACTGCCAGAAGACGTTCACACGCAAGGAGCATCTCAATAATCATATGCGCCAGCATTCAAGCGACAATCCGCATTGCTGCAATGTGTGCAACAAGCCCTTCACACGCAAGGAGCATTTGATCAATCACATGTCACGTTGCCACACCGGTGATCGTCCCTTCACCTGTGAGACTTGCGGCAAATCCTTCCCCCTCAAGGGCAATCTACTTTTCCATCAGCGCAGCCATACCAAGGGACAGGAGTGTGAACGTCCCTTTGCCTGCGAAAAGTGTCCCAAGAATTTCATTTGCAAGGGTCACTTGGTCTCGCACATGCGATCCCATTCGGGCGAGAAACCGCACGCGTGCACGCTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCTCCACCCGTGCATCCGCATCCACAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCACATCActcaacgacgacaacaatgCATACCATACAGCAGATAAcagctggtgctgctgccgctggtgCTGGAGCCGTGCAGTTGACACCCGGACTGGTACCGCTCGTCTCGAGCATCTCGAGCATCTCGTCGCACAATGCACAGCAAtcgcagaaacagcagcaggcggcagctgcagcagttgctgccCAACAGcaagcggcagcagcagcagcggcccAACAAcaggctgcagcagcagcggctgcacAACAGCAGGCAGCGGCTGTGGCAcatcaacagcatcagcaacaggttgctgcacagcagcaacaacagcagcagcaggctgCTGTAGCCgcacatcagcagcagcaacaacagttgcagcagcagcagttgctacAGCTGTCCATACAGCAGGCagcacatcatcatcagcaacatcaacagcagcaacaacagcagcagcagcaacaccatcaacagcagcagcaacaacaacaggcccATCCACAGGCaccgccacagcagcaacaacaacagccaccaCCGCAGGTGCCAATTGCATTGATAAGTGATCCAAGCGCACTGGCACGAGCTGCCATGCAGCTGCAACATCTGCCCACCAATGTGGAGCAACATCCGGTGGTTTACTAA
Protein Sequence
MQHVSAASSAPSVVSAPSSVVTAGGGTTTITLGGGPPPISLSNKLIDHHNSHNHHHQQQQQQQQQQQQHQQQQQQQHHHNSKDDAGKQQLQPPHGLEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGGSQLPPPPQLPPPPPLPPQTTHSSASAAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAATAQQQQQQQQQQQQQAVTSTNAGSQQGSATVTTTSSGSNGNNNNNNNNNSNGGSNNNNNNSNNSNNSTTTTTTATGELLMPKMEGGIHGIDGQSSSSSSVTLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKENLLNHVRQHTGESPHRCSYCIKTFTRKEHLVNHILQHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSTTTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVSSISSISSHNAQQSQKQQQAAAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAVAHQQHQQQVAAQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQQQHHQQQQQQQQAHPQAPPQQQQQQPPPQVPIALISDPSALARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00560429;
90% Identity
iTF_00471012;
80% Identity
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