Dpar011356.1
Basic Information
- Insect
- Drosophila paramelanica
- Gene Symbol
- -
- Assembly
- GCA_035043915.1
- Location
- JAWNMO010000674.1:2055046-2070944[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-11 1.7e-08 33.9 0.0 1 40 564 604 564 607 0.90 2 4 5.7e-14 9.5e-11 41.1 0.1 2 39 619 656 618 659 0.94 3 4 1.3e-17 2.2e-14 52.8 0.0 1 45 673 718 673 718 0.98 4 4 1.3e-19 2.2e-16 59.2 0.0 1 43 725 768 725 769 0.97
Sequence Information
- Coding Sequence
- ATGGCACGTTTTGAGGGTTTGCTGCGCACCGCGGAACAGTTGAAAATCAAAGGCCTCTGCGAGCCGGCTGAGAATGCGGATGATTTGAATGACGCGGCATCGGCGACAATAACGGTATCGGAGAACATACAGCAGGCGGTTGTTGGCAACATTGTGAATGCGAGTCTAGTGCACGGCGCGCCCTCGCCCACcatcgagcagcagcagcaacagcaccatcagcagcagcagcaacagcagcagcagcagcagcaacagcaggagcatcagcagcaggtgcaacagcagcagcaattggtgAACAGTGCGTTGCTGACACAACATACGCTTGCAACAAACAGTGGCATTCAGTTGGCCAATGCGGCTGGGCAACAGCTGCTAGGCAACACAAGTGGCACAAGCAGCAgtttgcaacagttgcaacagcagcagcagcagcagcaacaacaacaacagttgcagccaACGCCGCGCAAATCGCGACTGCGTAAACGTTCCAAATCGCCAGATTTGCAATTGGGTGGCAACGCCGCCGGACAGCAACCACAGCCGGcacatcatcagcaacagcagcagcagcaacagcaacaacaacaacagcaacaacaacaacaccatcaTCCGCAAACGATACTCATCCAGGGCCAAAATCAAACATCGATCGTGAGTCTGCAGCAAACAGCCGACGGCAATTATATACCCGTTAGCACAGCGGGCGACGACTCCGATAGCGATAACAAGCCGCAAAAGATCTGCAAGACAGAGCAATCGGTGGCCTCCCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGaacggCGGTCTGTTGGGCGTGCCCATGGGCTTCCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACATGTCGATCTATCGTGCAATCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCATCATCATGCCACTGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTGATTGAGGCCAAGCACTTGGCGcatgtgcagcagcaacagcagcagcagcaacaacaacagcagcagcagcagcaacaacaacaacagcaacagcagcaacatgcacatcatcatcagcatatGCACGCTCAGCAATTGTTGTCGCaaagtcagcagcagcagcagcagcagcagcagcaacagcaacaccaacagcagcaacagcagcaggcggcggtGCATGCAGCACAGCATGCAGCGCATGCCACGCATACGGAAATCGGTGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACAGCGCATATGGaCATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCACCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGACGCTCTGCAGAACGCATTGGAGGCATTGCGTTCCGGACAAATATCGGCGAATAAAGCATCGAAAGCGTTCGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGCGAGGGTATCCGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCCGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGACGCAATGAACGAGGCATTGAACTCAGTGCGCGTCGGTCAAATGTCAATCAATCAGGCGGCCATACATTATAACCTGCCCTACAGTTCGCTTTACGGACGCTTCAAGCGTGGCAAGTACGATGTGGTGGCCAACACCAGTGGCGTCTCCTTGATCAACACATCGGGCAACACGACCGGCAGCATTGAAATTATCGAGCATAGTCAGGAGAATTCGttgcatatgttgcagcaacagttcCCGTACAGTCCGTCGCCGCATCCGCCGACGCCGCAGCATCACAATGCGCCGCAGCATCACAGTACGCCGCTGCATCACGGCACGCCGCAGCATCACAGTTCGCAGCAGGGGCCGCCGACGCCGCAGAATATGCAACAGCACGTGGTGCACATGCAGCAGTCGCCGCACCAGgcgcaccaccagcagcaacagcagcacatgCAACAGGATGTGGTCACATCGAGCAGCCAGGTGGTGCatagccagcaacagcaacagcagcagcaacagcagcagcagcagcagcagcagcagcttcagcagaTCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MARFEGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIVNASLVHGAPSPTIEQQQQQHHQQQQQQQQQQQQQQEHQQQVQQQQQLVNSALLTQHTLATNSGIQLANAAGQQLLGNTSGTSSSLQQLQQQQQQQQQQQQLQPTPRKSRLRKRSKSPDLQLGGNAAGQQPQPAHHQQQQQQQQQQQQQQQQQHHHPQTILIQGQNQTSIVSLQQTADGNYIPVSTAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQQQQQQQQQQQQQQQQQQQQQQQQHAHHHQHMHAQQLLSQSQQQQQQQQQQQQHQQQQQQQAAVHAAQHAAHATHTEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTAHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLINTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHNAPQHHSTPLHHGTPQHHSSQQGPPTPQNMQQHVVHMQQSPHQAHHQQQQQHMQQDVVTSSSQVVHSQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_00538149;
- 80% Identity
- -