Basic Information

Insect: Drosophila parabipectinata
Gene Symbol: -
Assembly: GCA_018153455.1
Location: JAECYA010000282.1:10229707-10235385[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0032 0.24 11.8 0.3 1 23 139 161 139 161 0.97

2 14 3.4e-05 0.0025 18.0 2.5 1 23 367 389 367 389 0.98

3 14 7.6 5.7e+02 1.2 1.9 1 23 395 418 395 419 0.91

4 14 0.67 50 4.5 0.4 1 23 438 461 438 461 0.93

5 14 0.00096 0.071 13.5 1.9 3 23 721 741 720 741 0.92

6 14 0.038 2.9 8.4 1.4 1 23 747 770 747 770 0.98

7 14 1.4 1.1e+02 3.5 0.9 2 23 807 828 806 829 0.91

8 14 0.0011 0.086 13.2 0.4 1 23 850 873 850 873 0.97

9 14 0.0014 0.1 13.0 0.3 1 23 1075 1097 1075 1097 0.98

10 14 0.0051 0.38 11.2 5.1 1 23 1109 1131 1109 1131 0.98

11 14 0.00022 0.016 15.5 0.6 2 23 1137 1159 1136 1159 0.92

12 14 0.0026 0.2 12.1 5.2 1 23 1165 1190 1165 1190 0.95

13 14 0.0095 0.71 10.3 0.7 1 23 1195 1217 1195 1217 0.97

14 14 0.33 25 5.5 3.7 1 23 1223 1246 1223 1246 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0032	0.24	11.8	0.3	1	23	139	161	139	161	0.97
2	14	3.4e-05	0.0025	18.0	2.5	1	23	367	389	367	389	0.98
3	14	7.6	5.7e+02	1.2	1.9	1	23	395	418	395	419	0.91
4	14	0.67	50	4.5	0.4	1	23	438	461	438	461	0.93
5	14	0.00096	0.071	13.5	1.9	3	23	721	741	720	741	0.92
6	14	0.038	2.9	8.4	1.4	1	23	747	770	747	770	0.98
7	14	1.4	1.1e+02	3.5	0.9	2	23	807	828	806	829	0.91
8	14	0.0011	0.086	13.2	0.4	1	23	850	873	850	873	0.97
9	14	0.0014	0.1	13.0	0.3	1	23	1075	1097	1075	1097	0.98
10	14	0.0051	0.38	11.2	5.1	1	23	1109	1131	1109	1131	0.98
11	14	0.00022	0.016	15.5	0.6	2	23	1137	1159	1136	1159	0.92
12	14	0.0026	0.2	12.1	5.2	1	23	1165	1190	1165	1190	0.95
13	14	0.0095	0.71	10.3	0.7	1	23	1195	1217	1195	1217	0.97
14	14	0.33	25	5.5	3.7	1	23	1223	1246	1223	1246	0.93

Sequence Information

Coding Sequence: ATGGCGTTGAACAAAAGGTTGAGCTCCCAAGCGGACGGAGCGGACTTCAAGTTTGCGTGTCGCTGCTGTCTGAAGATGAACACCGAGTTCCTTAAGCTGGACTCTGTGACGGTTGCTCGCAGTCTGGACCCGGCGGAGGCAAAGGATAAGATTCCGCTAATGCGTTGCCTGCTGTACTGTACACGCGGTGAAAACCCGGCCGAGCTTCCCCAGTACATCTGCATCGAATGCAGTCAGAGCCTCCAGGTAGCCTACTACTTCCTCCAGAACGCAGTTCGCGCGCACGAATTCCTCTGTCGCAAATTGTGTCCGTATAAGGCGTTCAAAACTCGCGTCAACGGTTCCCTAGGCCAGGAGCTGGAACAACATTTGGAGAGCGATACTGAGAGGACGAAGCCATTGAAAACAATGCGCCACGAGTGCCAGGTGTGTGGGGTCATCGTTTACAATCGCCTCGAGCTCAAGCAGCACATCCGCCTCCATGCAGATGGACTCGCTTATCACTGCAAAATGTGCAGCTTTACAACGCTAAAGCAGCGTCTGTTGCACGATCACTATCGTTCAACCCACAACCAAAACGCTACCCAGGCCGAGGAGCTTTCCAAAGTGAAGCTTGAGCCAATAAAAAAGGAAGATGAGGTAAAGGTGTGCACAATGGAGGATATGGAGCTTCTGATACCCACGGTACTAACGCCGGAGGACTACTCAGCGGTGCCAATCGATGCCGACCAGTTGCGGGATATTGAACAGCAGCTGGCGGTCACAATGGGCGAAGCAGCGCCGGGGGTGGACACTCTAACCTCCACATTACCGCCCATGGATGCCCACAACGTGAGCATCGGCACCGAGTATCTTGTCTTGCCAGATGGATCGCTGCAGCAGGTCAACGGAGGCGGCGTGGTCATTGAGTATATAGACGATAGCAAGCCCCCAAATGTTAATCCCCATCCCCCTTCCATCAACATAAACCTGCAGAATCTTCTTGGGGGTGGCGACGATGGGATGGATATTGATGTCAATGAGCTGATTGTGGAAGATGTGCTTCCGCAAATAAAAGTAACGCCAAAGCCAGCGCCGCTTGGATCTCCAGTGCACAAACACAAATGCAAATTGTGCCCCAAAACATTCGCCACTTTGGCACGTCTAAAGTCTCATCAGTTGACGCACAGCCATTTGCCGAAGTTTTTCTGCGATCAGTGCGAATACTACTCACTGCGCAGCGCCGATCTCATCCAGCACTATCAGAACCAACACCACCGGCCGGAGGGTGTTGCGGAGAAACCGGACGGTTTGAAACAGGAGGTTCGCACATACTCTTGCGACATGTGCCTCTTTGAGACGCGTACAGTCAACGAACTGCGTGTCCACTACGCACAGAGTCATACGGTTCAGCCGACGGATGTGGAGCTGCGTCCCAGCTGGACGGCCGATACTAGTAATGCTGTCAAAGATGAACCATCTGTAGACGAAAAGCCGCCGGCAACTCTACCGCCATTGACAAACTCTTCCGAAAACCACGTACCCATCAAATGTCCTCCTGCAGTTGCAGACACACAACCGGGGCAATTTCAGCAGCTGCCGGTGGAGGCAACGACATCCGTTGCCCAAACCGAGGTCATCAATGCGGTGGTCGATGCCACGCCGCATTTCTTTGCGGCCACTTCCAATTCCATTGACGCAGTTCATGCGCCACCAGTACAAGAAGTTGCCGTAACCACTGACGGGGCTCCATGCAGTTCATTCGAAATCTTTCCAGAAATCTCCCAAGGCAATTTGTCGGCTAACGAAACCGTACCGCAGGCGCCGGCAAATACTTCCAATCAAAATATTTCCATGTTCGGTGACATGCAGGATTTTATTGACAACACCGACGTGGCTGCCATATGCACCATTCCAGCCGATGATATGCCAGTGGTCGATGGCGACGACATCGTTATTGATAATAATAATATCAGCCTGGACTTTGATGCCGAAAATTTGTTCGAGGACTTTGAAGAAGACGAGGAGGTGGCGGCCGAGGAGGAGGACGATGAAGGTGATAATGAGGACGAAAACGACAACAATGATGCAGCCACCGATCAAAATCTGCTGCTAACCAGTGACGATGACGATGTCGACGATTTCGATGATGAGCAATCGAAGCATCTTCAGAAGCCTTATTGTATTTATTGCAACAAAAAATTCACCAGCCAGTACAAATTTGAGAATCACATGTTTGTTCATCGGGGTCTGGCTCCCTATCGCTGCGAGTTGTGCACCAACCTCTACAACATGAAGAGACTCCTGATCAGACACTACAAAACCGTGCACAAGCGAATGCCCACAAGGGATATGGTCCAAGCCAAAGGTGACAAGGTTTCGGTGGCACGATCGAGCCTTGAAAAGATCGAAACTAACTTCAACAAGAATCCGATGCTCATGTGTGCAAAGTGTCCGTTCGAGTGTGAACCGGAGGGAGAGATGCGAAAGCATTTAAATGCCCACCACGGCATCAACGATGGGGTATCCGTTCATGCAAACGAAGTGTTTATCATACGCAAACTGCCCTTTGAGTGCCCGCGATGCATTCGCTCGTTTGCGGCCAAGAGCACCCTGATTCGCCATCTGCAGCGAAGCCATTTGGTGGAGACGATCATCGAGATGCCATCATCACAAGCAACAGCCAGTTCGGCGGCCACAACCACAACAACGACGGCCACGGCGACCACATCCGGGCCGGCCAGCAGCACTCAGGATGGAGATAGGATGACAGTATCGTCGACTGCTGCTAAAAGTGGCGGTGGCGGTGGCAATGGGGAATGCGAGGGGACAGGCACAGATGATGGAGACCCAGCAGGAGAAGGACCATTAATTAAAGCGGAATTAATACAACCCAAAGAGGAGATAGATGTCGTTTCATTCGGGACCTCCGCTGCCCCAACAGCCGGCATATCATCAGCAACGGCAACCAATCCTGGAACCGCAGTAAAAACATCAACATCGCCCATTACAACCACAGCCTCATCCACATCGGCATCCTTCTCGACACTTTACCCCACGCCAACGCCATTCGACTTGGACTGTGACCTGATATCCGATGTCCCAGTCGAGCAAACCACACCCACGTCCACTACCAACTCTAATCCCAGCGCACTTTTAAATGGCAGTGATAAGTTTCTGTCAAGTCTGCCCCAAGCAGAGAAATATGTACCATCCAACTCCCGACTCCCACGCACCCCATCATACAAGTGCAAGTTGTGCAGCGAGACATTCGACGAGCTGGGAAAGCTGGTTAAGCACGAGATGGTGCACTCGAGTACGGAATCTAATCGGTATAACTATCAGCACAAGTGCACTATTTGCAACACCAGCTACCGCAATCTGACTTTGTTGAAGTTTCACATGAAACGGCACACGAATCGCAAGATTCAGTGCAAGCTATGCCCAAAGTCTTTCGCAACCAACCAGGAGCTGGATCGTCACTCGAAGGCCAAGCATATGAGACCGAAGACGTTCCGGTGCACGTTGAACAACTGCAACAAGACGTTCGCATACAAGCACCACATGGTGCGGCATCAGAATGCGACCCACTTGCAGACGCGGCACGTGTGCACCATATGCGACAAGGAGATGATGACCAGCCTACTACTGCGGAACCACATGTCCGTACACAAAAGTGGAACGCTGTATAAGTGTCCACATTGTGATCGACAATATTTACGTCGGGGACGGATTTGTTCACATATTCTAAAAGTCCATAAAATCAAAGCAACAGAGGCGGAACTAGCCGAAATCTTTAAGGCCAGCTCGAATGGCACGCATGAATTAAACTCGAGGAGCCGCCAGGGACAGCTAGTGCGGCGCAAAGGATTGGATATCAAAACAGAAGTCAAGGAAGAACCGGGTCTTCAATCATCTGCAGAGGATATATAA
Protein Sequence: MALNKRLSSQADGADFKFACRCCLKMNTEFLKLDSVTVARSLDPAEAKDKIPLMRCLLYCTRGENPAELPQYICIECSQSLQVAYYFLQNAVRAHEFLCRKLCPYKAFKTRVNGSLGQELEQHLESDTERTKPLKTMRHECQVCGVIVYNRLELKQHIRLHADGLAYHCKMCSFTTLKQRLLHDHYRSTHNQNATQAEELSKVKLEPIKKEDEVKVCTMEDMELLIPTVLTPEDYSAVPIDADQLRDIEQQLAVTMGEAAPGVDTLTSTLPPMDAHNVSIGTEYLVLPDGSLQQVNGGGVVIEYIDDSKPPNVNPHPPSININLQNLLGGGDDGMDIDVNELIVEDVLPQIKVTPKPAPLGSPVHKHKCKLCPKTFATLARLKSHQLTHSHLPKFFCDQCEYYSLRSADLIQHYQNQHHRPEGVAEKPDGLKQEVRTYSCDMCLFETRTVNELRVHYAQSHTVQPTDVELRPSWTADTSNAVKDEPSVDEKPPATLPPLTNSSENHVPIKCPPAVADTQPGQFQQLPVEATTSVAQTEVINAVVDATPHFFAATSNSIDAVHAPPVQEVAVTTDGAPCSSFEIFPEISQGNLSANETVPQAPANTSNQNISMFGDMQDFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNISLDFDAENLFEDFEEDEEVAAEEEDDEGDNEDENDNNDAATDQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKVSVARSSLEKIETNFNKNPMLMCAKCPFECEPEGEMRKHLNAHHGINDGVSVHANEVFIIRKLPFECPRCIRSFAAKSTLIRHLQRSHLVETIIEMPSSQATASSAATTTTTTATATTSGPASSTQDGDRMTVSSTAAKSGGGGGNGECEGTGTDDGDPAGEGPLIKAELIQPKEEIDVVSFGTSAAPTAGISSATATNPGTAVKTSTSPITTTASSTSASFSTLYPTPTPFDLDCDLISDVPVEQTTPTSTTNSNPSALLNGSDKFLSSLPQAEKYVPSNSRLPRTPSYKCKLCSETFDELGKLVKHEMVHSSTESNRYNYQHKCTICNTSYRNLTLLKFHMKRHTNRKIQCKLCPKSFATNQELDRHSKAKHMRPKTFRCTLNNCNKTFAYKHHMVRHQNATHLQTRHVCTICDKEMMTSLLLRNHMSVHKSGTLYKCPHCDRQYLRRGRICSHILKVHKIKATEAELAEIFKASSNGTHELNSRSRQGQLVRRKGLDIKTEVKEEPGLQSSAEDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00615723;
90% Identity: iTF_00580219;
80% Identity: -