Doch013582.1
Basic Information
- Insect
- Drosophila ochracea
- Gene Symbol
- -
- Assembly
- GCA_035044125.1
- Location
- JAWNML010000062.1:888002-894104[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.9e-05 0.0018 18.5 1.0 1 23 152 174 152 174 0.97 2 15 0.00088 0.056 13.8 1.2 3 23 182 202 180 202 0.94 3 15 9.6e-05 0.0061 16.9 0.1 1 23 386 408 386 408 0.98 4 15 0.00033 0.021 15.2 0.9 1 23 414 436 414 436 0.98 5 15 0.00012 0.0074 16.6 2.3 1 23 468 491 468 491 0.94 6 15 0.76 48 4.6 4.3 1 23 536 558 536 558 0.87 7 15 0.0043 0.27 11.7 0.4 1 23 564 587 564 587 0.98 8 15 0.028 1.8 9.1 0.4 3 19 596 612 595 613 0.95 9 15 0.00017 0.011 16.1 5.6 1 23 622 644 622 644 0.97 10 15 0.043 2.7 8.5 1.2 2 23 650 671 649 671 0.96 11 15 9.8e-06 0.00062 20.0 1.0 1 23 680 702 680 702 0.98 12 15 0.0011 0.07 13.5 0.1 3 23 710 730 708 730 0.97 13 15 5.9e-05 0.0037 17.5 0.5 1 23 736 758 736 759 0.95 14 15 0.05 3.2 8.3 0.4 1 23 769 791 769 791 0.97 15 15 0.00051 0.032 14.6 0.5 1 23 1295 1317 1295 1317 0.98
Sequence Information
- Coding Sequence
- ATGAACAATCCGAACTATGGCGGCATCCAGTGGATACAGCAGGAAAGCAGCGCCGTCGTCGACGACAGCGAATCAGAGATGACAGCAGCATATTTGGTCAACGCTGACGCCAATGGAAGCATTTCCAACGATGACGATCTCGATCATATGGCAGCCGAGAATCTCATCTTTATGGCACGCGACGGCCAACTGAGCGAAATCATCGCCGCCAATGAAGCAaatggcggcagcagcacagTGCTAATTACGGAGAGCGATGGAAATATCGGTGTCGAGTACGCCGAGTCCTTTGAAGATGATGCCCAAGTCGTCACCGAAGAGATCATCACGGATGATTGGGTCCAGCATCAGGGTGCAGAGCGagTGGAAATTGCCGCTGAGCAAATCGCTGGCAACGGCAGCTCCCAGGAGTTGTTGGACATGCAACAGAATGAGTATATGGCGATGCGTCCCTATCCATGTGACTTTTGCAGTCGACGGTTTCGGAAGAAGGCCAGCCTCAACAATCATATGCTGGCGCATCAGAATGATCGTCCCCATCTATGCAAGCTGTGCGGGGCGCGTTTCTCGCGTCGCGCGGAGCTCATCAGTCACTTCAAGGCGCATGCGGAGGCCCAGGTGGCCGCCGATGAAGAGGCCGCTGCGGCAGCTATCAAATTtgagccacaacagcagctacaacaacagcagctacaacaacagcagcagcagcagcagcagcgacaaattGAAGATCATTTCTATGAGCAGGAATGGCCGCTGTAtcaggaacaggagcaggagcaggtcgaggagcagctggagcagatcgaaaaggagcagcagcagcagcagttggaacagcatcagcagctgttgcaacaaTTGGTGGCACCACCAACCGCTGCCCGGGGACGCATCAGTCGCTTAAAGCTCAAGGAGGAGAGTTCGCAATATATTGTGATTGCCTCCGATAAACCGGAGgcggagacggagacagagacggagTTGCCTCAATACATGCATTGCGAGGCGAATTGCGATCAATCActtgccaccaacaacaaccaactcCAATCAACATCCAACAATGAagttgcgactgctgctgctgatggagcacaggggcaggggcaggcaACGCTGCGTTTTCCCGTGCTTGACGAGAGCAAACCCTTTGTCTGTCAGCAGTGCGGATTGGCCTTTGCCCGCGAGAAGGCGCTCGTCTCCCACATCAAGAATCATCGCGTGGATTCGCCGTTTGAATGCAATCAGTGCCAGGAGATGTTCTGGGACAACTACAGTCTACAGGAGCATCAGAAGACGCATCAGTTCGAGGAGAGCAACTCGGAATATGATCCGGCATCGGCGGGCGAGGAGGATACGGCAAGCGAATCGGAAGCGGAACAGCTTTACGGTAATTTCTACTGCGGTGAATGCGGCATCTCCTTTCACCGGCAGGATTTGTTGCGGCgccacagcaaacagcagcacagcaaGCAGCTGCCTGCAACAAGAGctggtaacaacaacaacaacaacaacaacaatgtggcaactgcaacagcagcggatgcagctgcagctccaactgatgccgatgctgatgatgcCAAAGATGCGACACATTGTTGCCACACGTGCGGCAAATCATTTCTCAGCGTACTCAAACTGCTCGCCCATACCGAAATCCACAAACGCTTCCCGCCATTCAAATGTGTCCTGTGCGGCGTCAGTTTCTACGAGGAGCAGGCCATAAAGCGGCACCTGAATACGCGGCATCCGCATGAGCTGAAGCCCAAttcgtgtgtgttgtgtggcaAGGAGTGTCGAGATCGGAAGGCGCTGATCAAACATGCTTGGGATCATTCACGGGAGAAGTCCCACTCGTGCTCCAAGTGTGGTAAGAATTTCCACAACAAGGCGCGCCTGAAACGACACATGGCATCGCATCGCGACAAGTCTGTCGTGTGCGAAGTGTGCCACGAGGAGTTCCCAGATGGACGCACCTTGTCCAATCATCGGCATTCCCACAGCACAACGTCGCCGGGCAAACTATTTCCCTGCCACGAGTGTGGCAAGACTTTTGGTTCGCGCAGCTCGCAACAGATTCATGTGCGCATCCATACGGGTGAAAGGCCCTACGGTTGTCGCTACTGCTGGAAGGCCTTCGCCGATGGCGGCACTCTCCGCAAACACGAACGCATCCACACGGGCGAGAAGCCCTATGCCTGCTCCGTCTGTCCGCGTGCATTCAATCAGCGTGTCGTGTTGCGGGAACACATCCGGTCGCATCATTCCGGTCTGGATGCGGCACGTGGCACGTATCATTGCACGGTCTGCTCCGCGGATTTGAGCTCATCGAATGACCTCATCCAGCATCTCATCCAGCACAGTGATACGAACACAGCCAAACAGCGACAGCCAATTACTGGTCCACGTAAATATAAACGTCGCCGGAAACTGCAGCCGCATGAGATTGCGCACATGCGCGCAGAGCACAAGGCTGGTGGTGGCAAAGGCGAGGAGGAGGATTATGGCAGCGACTTGGACTACTGCGATCTGGATGTGGAGAATGTGGATGAACTGCTGCAGGAGGCAGCCGCagagccaccaccaccagccaCCAAAAAAGcgaaacgcaaacgcaaagcGCCAAATAAAACCGGCGATGAGCAAAGACTGTGGGATGAGAAATTCCTGCAGCAGGCGAGCAATGGGAACAGCGATGAGGCCTACAAGAGTTTCTTTCAAATGGATTCGCTGGTTGTGATCAATGATCAAACGTTGCAGCCCGTTGATGCTGGTGTTGCCACGACCAAGTTGCAGCAGGCGGAGATTAAGGAGCAAAAACTCAAAACAGGCaatcgcagcagcaaaagaaggGCTGGCAAATCTGGgggaggagcagcaggaggaacAGCAGGAGTAGTagaagctgttgctgctccacgTCCTCGCATGATACACACGGCCAAGTCGCAGCAGACAACGTCAAGGAAATCCCGCACAAGGAGTTATGTCACACGCACCAGCAccaatgagcagcagcagcagcagcagcagccaggagGAGGAGCAAGCCTCATCAAATCGCGCATTGTGGATGACTACGAGATCATCTCACCGGCCACACAGCCACCCAATCAGATCAGCTCCAGTCCGTTGCACATCAAACAGGAGCAGGAACATCAAcagcaccatcagcaacagcaacagcaacaccaacgaACCCAACTGCTCTTCGATGACAGCCATCTGCTCATCGATGCGGGCCTGTTGCGTGAGAAGACCTACGAGAAATATAATCCGAGCATTGTCCAAGATCTCGAGGAGATATTGCGTAGTCCCCCCAAGCATGAGCGAAACGATCGACGGCTACGCTTCATCAGCGAATCGTCGACGACGCCACAATTTCTGCCCGGCGAGGAGGAGGAACAGCATCTTATCAAGATCGAGCCAACGTCACCGGATCTACGCGAAATGGTTGAgagccagcagccagccacACTGCCCACATCCTCCTCCGCCGCCTGCTCAACGGCGGCACGCACTTCCCGCCACCTGCGACAGCTGACTGCCAATGGTTCCAGTTCCATTTCCACTGCCACTTCCAGTTCCAGTGCCGCTGCCAGCACGCGAGCCGCTGCCAAGCGCAATGCCAGCAAGCAGCTTGCCAAGAAATCCACTTCCAATAGCAGCAAAGCCAACTCATCATCGTCTTATCTCAGCTATGGCGTCGACTCCTAtaatgtgggcgtggcagccaGTGCCAATGGCTCCTCGGATGTCAGTTCCGGTTTCTTTTCTATTTCCGAGGTCGTCTCGGCAGCGGATGCTGCCGATGCAGCTGCgaaggcggcggcggcggcagccaGCAAAATGGAGCGAAGAACGCGCTGCTTTGAGTGCGAAATGTGCTCGTCCATTTTTCCAGATCGCTCTCAGCTGCTGgaacacatgcacatacacatttag
- Protein Sequence
- MNNPNYGGIQWIQQESSAVVDDSESEMTAAYLVNADANGSISNDDDLDHMAAENLIFMARDGQLSEIIAANEANGGSSTVLITESDGNIGVEYAESFEDDAQVVTEEIITDDWVQHQGAERVEIAAEQIAGNGSSQELLDMQQNEYMAMRPYPCDFCSRRFRKKASLNNHMLAHQNDRPHLCKLCGARFSRRAELISHFKAHAEAQVAADEEAAAAAIKFEPQQQLQQQQLQQQQQQQQQRQIEDHFYEQEWPLYQEQEQEQVEEQLEQIEKEQQQQQLEQHQQLLQQLVAPPTAARGRISRLKLKEESSQYIVIASDKPEAETETETELPQYMHCEANCDQSLATNNNQLQSTSNNEVATAAADGAQGQGQATLRFPVLDESKPFVCQQCGLAFAREKALVSHIKNHRVDSPFECNQCQEMFWDNYSLQEHQKTHQFEESNSEYDPASAGEEDTASESEAEQLYGNFYCGECGISFHRQDLLRRHSKQQHSKQLPATRAGNNNNNNNNNVATATAADAAAAPTDADADDAKDATHCCHTCGKSFLSVLKLLAHTEIHKRFPPFKCVLCGVSFYEEQAIKRHLNTRHPHELKPNSCVLCGKECRDRKALIKHAWDHSREKSHSCSKCGKNFHNKARLKRHMASHRDKSVVCEVCHEEFPDGRTLSNHRHSHSTTSPGKLFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDAARGTYHCTVCSADLSSSNDLIQHLIQHSDTNTAKQRQPITGPRKYKRRRKLQPHEIAHMRAEHKAGGGKGEEEDYGSDLDYCDLDVENVDELLQEAAAEPPPPATKKAKRKRKAPNKTGDEQRLWDEKFLQQASNGNSDEAYKSFFQMDSLVVINDQTLQPVDAGVATTKLQQAEIKEQKLKTGNRSSKRRAGKSGGGAAGGTAGVVEAVAAPRPRMIHTAKSQQTTSRKSRTRSYVTRTSTNEQQQQQQQPGGGASLIKSRIVDDYEIISPATQPPNQISSSPLHIKQEQEHQQHHQQQQQQHQRTQLLFDDSHLLIDAGLLREKTYEKYNPSIVQDLEEILRSPPKHERNDRRLRFISESSTTPQFLPGEEEEQHLIKIEPTSPDLREMVESQQPATLPTSSSAACSTAARTSRHLRQLTANGSSSISTATSSSSAAASTRAAAKRNASKQLAKKSTSNSSKANSSSSYLSYGVDSYNVGVAASANGSSDVSSGFFSISEVVSAADAADAAAKAAAAAASKMERRTRCFECEMCSSIFPDRSQLLEHMHIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00542584;
- 90% Identity
- iTF_00499722;
- 80% Identity
- -