Dnov009434.1
Basic Information
- Insect
- Drosophila novamexicana
- Gene Symbol
- SMARCC2
- Assembly
- GCA_003285875.3
- Location
- NW:2447561-2453473[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9 1.4e+03 -1.0 0.1 34 43 203 212 202 214 0.85 2 2 9.3e-15 7e-12 44.8 0.2 3 44 656 697 654 699 0.95
Sequence Information
- Coding Sequence
- ATGAATACACTCGGTCCTAAAAAGGACGGAAGTCCCAATATTGAATTTTTCCAATCGCCGGAGACGCTGCAAGGCTTTGAGTCTATACGACTATGGCTACAAAAGAATTGTAAAAAGTACTTGGCGCATAGCTCAGAGCCAGTAACAAAGGAATCCCTTGCACAATTGCTAATACTATTTCTGCAATATGTGGAGGCCAAATTGGGAAAAAACTCGGCTGAACCGCCGGCAACGAGAATCCCGATGCGCTGTTTTCTGGATTTCAAAAACGGTGGAGGTCTCTGCATAATTTTCTCCACCATGTTTCGTTTTCGGGCCGAGCAACGTGGCAAAAAGTTTGACTTTTCAATTGGGAAGAATCCTACCCGCAAGGATCCCAACATTCAATTGCTGATCGAGATCGAACAGGCCCTTGTAGAGGCAGATCTCTATCGCATACCTTACATCTATATAAGACCAGAGATTGAGAAGAGCTTTGAAGCACGTCTGCGTGAGATTCTTGACAATCGGCGTGTTGAGATCGTCACTGATGAGGAGGATGCCACGCATATTGTGTATCCTGTCGTGGATCCACATCCTGATGAATATGCTCGCCCAATTTTCAAGCGTGGCAATCATGTCATGCTTCACTGGTACTACTTTCCTGAGTCATATGACTCTTGGACACTGAATAGCTTCGATTTGCCGGAGAATATACCCGAGAACCCAGAATCGCCTGCAGAACGTTGGCGGGTGGCTGCATCATGGATTTTAGACCTGGAGCAGTACAACGAGTGGATGGCCGAGGAAGATTACGAGGTGGATGAGGTGGGAAAGAAAAAGACGCACAAACAGCGCATGTCCATCGATGACATTATGTCCTTTGGTGATGACAAAAAGAAGCCCACCacgagcagcggcagcggcaaacaAAAACGACGTCGGTCGCCGTCACCCACAACCTCAACGTCTACATCGAAGCCGGGAAAGCGAAAGCGGTCTCCTGCGGTCATTCACAAGAAATCGCGcaacgatgacgacgatgaggATCTTACACGGGATCTCGACGATCCGCCGGCTGAACCTAACATCCAGGAAGTGCATAAGGCAACGCATTCGGCGCTGCAATCGACAGCCAGCCCAGCACCCGGTGGCAAATCACGAGGTGACAACGATATGATGCCTATTAAAGGTGGCACCATGACTGATCTGGACGATGAAATGACTGGCGGCAGTGCTGCCCAGGCGCTGTCCACCGGCGACGGCGACAATTCTCAAACGGGCAAGACCAGCGACAACAGTAATACCCAGGAATTTTCATCCTCGGCCAAGGAGGATATGGAGGACAATGTGACCGAACAGACGCATCACATCATTGTGCCCTCATATTCGGCCTGGTTCGACTACAACTCAATTCATGTCATCGAAAAGCGCGCCATGCCCGAGTTCttcaacagcaagaacaaatCCAAGACACCAGAAATTTATATGGCCTATCGCAACTTTATGATAGACACCTACAGGCTTAATCCCACAGAATACTTGACCAGCACAGCGTGTCGGCGCAATTTGGCTGGGGATGTGTGCGCCATAATGCGCGTACACGCGTTCCTGGAACAATGGGGTCTCATCAACTATCAGATTGATGCCGACTTGCGTCCCACTCCTATGGGGCCGCCGCCCACCTCACACTTTCACATACTCTCGGATACGCCGTCTGGTTTGCAGGCAATCAATCCACAAAAGACGCAACAACCGTCGGCGGCCAAGACACTGCTCGATCTTGATAAGAAACCGCTGGGTAAGGAAACTGGCGTCGATTGCGATAAGaccagcggcggcggcttaGGCATCAAAACAGAGACACTGGAGAATGGCGCCACTAGTGGTTTAGCCTCTGGGGTTAGCCAGTTTGGCCTGAAATTGGATCAATATGCCAAGAAACCGGCGGCCATGAAAAATCGCACTGCGGCGAGCATGTCGCGCGAGTGGACTGACCAGGagacgttgctgctgcttgaggGCCTTGAGATGCATAAAGACGACTGGAATAAAGTGTGCGAACATGTGGGTACCCGCACCCAAGACGAAtgcattttgcactttttgcgCCTGCCCATCGAGGATCCGTACCTTGAAGATGATGGCGGCTTCTTGGGCCCTCTTGGCTGTCAGCCAATTCCATTCAGCAAGTCTGGCAATCCTATTATGTCGACAGTTGCATTTCTTGCATCCGTGGTGGATCcgcgtgttgctgctgccgctgcaaaaGCTGCCATGGAGGAATTCGCCGCCATCAAGGACGAGGTGCCAGCTACTATTATGGACAACCATATGAAGAACGTGGAGAAGGCCTCAGCTGGTGGCAAATTCAATCCCAACTTTGGTCTGGCAAACAGCGGCATTGCCGGCACTGGTAATGACAAAGACGATGACGAATCAAAGGAGGGAAACAATAGTAGCTCCACGGCAGGCGGTAACGATGAGGAAATGAAggatattaacaaaaaagacGCTACAGACGAAGCCAAGTCCAAAGACAAAACGAAATCGGATAAGCtcaacacaaacacagactCAAGTtccacatcaacaacaacaactactacaacagcaacaagcaacacGCCCACCACCAATAACACAGATAAAAAATCTAAAgattcgtcgtcgtcgttggcCGGCGGCGACAAAGCCAATAAAATCGACAAAATGAGCAACGCCTCAAACAAAACGGCTTCCAACTCCTCACCCACAGAAACTAGCACCAACAGCGATGTTGAGATCAAAACGGAAGACAACAGTGGGGACGGCGAGACCAAGGATGGCAGCAACGATGCCAGCAGCGGTGGAGCTACAGCCAAGGACGGGGCCTTCAGCGAGAACAATatgcaaacagcagcagccgcagcattGGCCTCGGCGGCCGTCAAGGCGAAGCATTTGGCAGCGCTGGAGGAGCGCAAGATTAAGTCGCTGGTAGCATTACTGGTGGAGACACAAATGAAGAAGCTGGAAATCAAACTACGTCATTTTGAGGAGCTGGAGGCAACCATGGAGCGTGAACGCGAAGGTCTTGAATACCAGAGACAACAGCTTATCACGGAGCGCCAGCAATTCCATCTGGAGCAGCTGAAAGCGGCCGAATTTCGAGCGCGCCAGCAGGCGCATCATCGCCTACAACAGGAGTTACAGCAACAGGGACAGCAAGTTGGCGCTGCTGCGGGTGCCATGATCATgccgccacaacaacaacaacaacagcagcagacatTACCGCCGCCGcatcatcaccagcagcaacagtcgcagcagccgcaaccgGTGGGAGCGCCTTCAGCACAGCATCAACCGTTGCCGGCGCACATAGCTGCAGGTGCCAATGGTGCACCTTTTCCAGCGCCGCCAGTTGTCCCTCCTGCAGCCGCTGCGCCGCCAACACCGCCCGGCGAGCTGCCTGCACCTGTTGCGCAAGCTCAAGCGCCTACGCCAATGGAAACTACACCGCCAGCTAATGCAGCACCTGTTGCCGAGGTCGCCAGCGTGGCAGCAGTTGCGCCCAGTACTGCGCCTGCTCCAAGCATTCCAGCGGCAAGCGTTCCGGCTGTTaatcctcctcctcctcctccttcaTCTTAA
- Protein Sequence
- MNTLGPKKDGSPNIEFFQSPETLQGFESIRLWLQKNCKKYLAHSSEPVTKESLAQLLILFLQYVEAKLGKNSAEPPATRIPMRCFLDFKNGGGLCIIFSTMFRFRAEQRGKKFDFSIGKNPTRKDPNIQLLIEIEQALVEADLYRIPYIYIRPEIEKSFEARLREILDNRRVEIVTDEEDATHIVYPVVDPHPDEYARPIFKRGNHVMLHWYYFPESYDSWTLNSFDLPENIPENPESPAERWRVAASWILDLEQYNEWMAEEDYEVDEVGKKKTHKQRMSIDDIMSFGDDKKKPTTSSGSGKQKRRRSPSPTTSTSTSKPGKRKRSPAVIHKKSRNDDDDEDLTRDLDDPPAEPNIQEVHKATHSALQSTASPAPGGKSRGDNDMMPIKGGTMTDLDDEMTGGSAAQALSTGDGDNSQTGKTSDNSNTQEFSSSAKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDADLRPTPMGPPPTSHFHILSDTPSGLQAINPQKTQQPSAAKTLLDLDKKPLGKETGVDCDKTSGGGLGIKTETLENGATSGLASGVSQFGLKLDQYAKKPAAMKNRTAASMSREWTDQETLLLLEGLEMHKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDGGFLGPLGCQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPATIMDNHMKNVEKASAGGKFNPNFGLANSGIAGTGNDKDDDESKEGNNSSSTAGGNDEEMKDINKKDATDEAKSKDKTKSDKLNTNTDSSSTSTTTTTTTATSNTPTTNNTDKKSKDSSSSLAGGDKANKIDKMSNASNKTASNSSPTETSTNSDVEIKTEDNSGDGETKDGSNDASSGGATAKDGAFSENNMQTAAAAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRLQQELQQQGQQVGAAAGAMIMPPQQQQQQQQTLPPPHHHQQQQSQQPQPVGAPSAQHQPLPAHIAAGANGAPFPAPPVVPPAAAAPPTPPGELPAPVAQAQAPTPMETTPPANAAPVAEVASVAAVAPSTAPAPSIPAASVPAVNPPPPPPSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560967;
- 90% Identity
- iTF_00598082;
- 80% Identity
- -