Dniv010247.1
Basic Information
- Insect
- Drosophila niveifrons
- Gene Symbol
- retn
- Assembly
- GCA_035046325.1
- Location
- JAWNOC010000052.1:32905541-32933950[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-26 8.7e-23 80.4 0.0 2 89 330 415 329 415 0.96 2 2 1.9 2.9e+03 -1.4 0.4 13 46 578 615 551 626 0.59
Sequence Information
- Coding Sequence
- ATGCAACTTCGAGTGCATCCGACTATGGACTGTAGCGGCCGTTCAACCAACAATATTGAACGCGATTCCGATTTGGGTGACGATTTgTCCCACGGCGATCGAACCGATGACGAGATGCGCGACTGCGATTCCGTTGACGGTGAGCATCATCAGCTGAGCGCCAAGGCGGCAATTGCCGCCCGGCTCAGTCACACAGTTGCCGGCGGTGCTGGCCTCAATTTCGCCAGTCCCGAGCAGCAAACAGATCTGCCACTCAGccatcatcatcagctgccCCCGAATCATCCGCTCAATGCTCTGGGCAGCTTCATGGGCATCAGCGGACTACACAGCATTCCAAATCTACAGCACAGCGATGTTCTCGAAAAGCTCAAGATGCAAGTGCGTGATATGAAAGTCGGTCTCATGGAGCAGGATTACGCAGCGGCGGCGCATGCAGCAGCCTTTGGAGCCAACATGTTGCCCACAACCATCGGCTCGGCCTTTCCGCTGCCCCACAACTCGGTGGCcgcagctgcggcagctgcaTCCTTTGGCCCCGTGCCGCCTGCTAGCAATGGCGCCACATACAATGGAGCCACCGGAGGAGGGGCAGGagcagctgcggctgccgcggctgctgctgcagttatGGCCGCCAATACggtcaataataataataataataatggtgGCAATAGTGGAGCAGGTGGCGGAGGAACTGGTGCAGGAGGAGGCGCAGGAGGaggcaacagtaacaacagcaatgttggcagtggcaacaacaacaacaacaacagcagcagcaacaacaacaacaacaacatggtCATCCCTTTTCATTTGCATCGCCAACAGCGCCAAGCGCCAAAGAAGGTTACTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCGAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAACGATGATCCCAAGCGCAAGGAGTTTCTCGAtgatttgttttcgtttatgCAAAAGCGCGGCACGCCAATCAATCGGCTGCCCATAATGGCCAAATCGGTGCTGGATCTATATGAGCTATACAATTTGGTGATTGCTCGCGGCGGCCTTGTCGATGTGATCAACAAGAAGCTATGGCAGGAGATCATCAAGGGACTGCATCTGCCATCGAGCATCACCAGCGCTGCGTTCACACTACGCACCCAATACATGAAGTATCTCTACCCATACGAGTGCGAAAAGAAGAACCTCAGCACGCCGGCCGAACTCCAGGCAGCCATCGATGGCAATCGTCGCGAAGGACGCCGTTCCAGCTATGGCCAATACGAAGCCATGCACAATCAGATGCCACTTACGCCCATTTCGCGCCCATCATTGCCgggtggcatgcaacaaatgTCGCCACTGGCGCTGGTCACACACgcggcagcagccaacaatcagcaagcagctgccgcagcagcagccgcgcATCGACGATTGATGGGCGGTCCGGCATTTGGCCAAATGCCCAATCTGGTGACACAGGAGATTGAGAATCGCATGATGGAGTATCTGCAGCTCATACAGGCCAAGAAGGAGCAGAGTGCTGGCCCCGTGCTTGGCGCCACACATccccaccagcaacagcagcagcagcagcaacaacaacagcagcagcaacagcaatcgttgcaccatcaccagcagcaacaacatctgcagcagcagcagcagcaacaacaacagcagcgacaacgctCGCAGAGTCCCGAGCTGAGCACACGCGATGCGTTGAGTGCACAGGTGGCGCTTTGGCACATGTATCACAACAGCAGTCCGAATGGTTCGGCACACACCTCACCACAGCAGCGCGAAGCGCTGAACCTCTCCGACTCGCCACCGAATCTCAATCTCAGCCACATTAAACGCGAACGCGAACGTGATCCCACACCTGAGCCAGCGGATCATGAGGATGCCACACATCAGCCGCCGCCAGCCAAACGTGTGGGCAGCGGCCTTATGCCACCCGGTTTTCCTGCTAACTTCTACTTGAATCCACACAACATGGCCGCTGTGGCTGCCATGAcccagcatcatcatcatcaacagcagcagcaacagcaacaggatgCCGCATCCGAGGGCGAGCCGGAGGATGACTATAACAATGCGGAGCACAATACCACGGGCAATTCATCGTCGATGCACGATGACATTGAGACACAGCAACTGAACggacatcatcatcaccatcatcacaatcatcatcatcagctgcatCATCTGGACAAATCGGATGATTCGGCCATTGAGAATTCACCCAGCACTTCCACAACGGCATCCGCCTCGGGCGGCCATCGCCACAGCTCGCCGGTGTCCACCAAAAAGAAGTGTGCCAGCAGTAAGACGCAATCCGGTGGCAAGGACGCTAAGCACGAGCACGACGAGCACAACAATTGCACTGTGAACGGTGGCGTTGCCAAGCTAAATCCCCTCGAGACACTTAGCCTGCTGTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACTGGTGCCAATGGTGAGCAGCAGTTGATTGTCAACCTGGAGCTAAATGGCATTAAGTACTCGGGTGTGCTGGTGTCCAATGCAACCAGAGTGGAGCCCAGAGTCGACTGTCCCGACTCGGACACGCTGCTaaatgcggctgctgctgatgccacGTCCGAGGAGCCGACGGTCGAGGAGGCTGGCAATGCGGTCAAGCATGAGAATAGCCAAGAAGTCAACCAGAACGATGCggttgacgacgacgacgacgacgaggaaaCGGACGAGCAGCCCACGGATGATATTGTGAATGGAATGGGAGCGGGAGCAGgagtgggcgtgggcgtgggcgtgggcgtgggcgttgGTGGTGGTGTTAGTGGCGTGTCTGTGCTTAAAGATGCTGTGGTCAGTTCGTAA
- Protein Sequence
- MQLRVHPTMDCSGRSTNNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGISGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTIGSAFPLPHNSVAAAAAAASFGPVPPASNGATYNGATGGGAGAAAAAAAAAAVMAANTVNNNNNNNGGNSGAGGGGTGAGGGAGGGNSNNSNVGSGNNNNNNSSSNNNNNNMVIPFHLHRQQRQAPKKVTNSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAAANNQQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQSAGPVLGATHPHQQQQQQQQQQQQQQQQSLHHHQQQQHLQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPNGSAHTSPQQREALNLSDSPPNLNLSHIKRERERDPTPEPADHEDATHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAMTQHHHHQQQQQQQQDAASEGEPEDDYNNAEHNTTGNSSSMHDDIETQQLNGHHHHHHHNHHHQLHHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKCASSKTQSGGKDAKHEHDEHNNCTVNGGVAKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLELNGIKYSGVLVSNATRVEPRVDCPDSDTLLNAAAADATSEEPTVEEAGNAVKHENSQEVNQNDAVDDDDDDEETDEQPTDDIVNGMGAGAGVGVGVGVGVGVGGGVSGVSVLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502302;
- 90% Identity
- iTF_00553537;
- 80% Identity
- -