Basic Information

Insect: Drosophila nikananu
Gene Symbol: -
Assembly: GCA_008042635.1
Location: VNJV01003296.1:62153-65220[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 9.4e-07 0.00011 22.9 3.1 1 23 204 227 204 227 0.95

2 17 3.3e-05 0.0037 18.1 0.2 1 23 234 256 234 256 0.97

3 17 0.18 21 6.3 0.1 2 23 288 309 287 309 0.94

4 17 4.5e-05 0.005 17.6 2.3 1 23 400 423 400 423 0.97

5 17 0.21 24 6.0 0.6 1 19 430 448 430 451 0.93

6 17 0.058 6.6 7.8 6.4 1 23 460 482 460 482 0.95

7 17 6e-06 0.00068 20.4 0.4 1 23 489 512 489 512 0.97

8 17 0.00034 0.038 14.9 2.4 2 23 520 541 519 541 0.96

9 17 0.016 1.8 9.6 0.1 2 21 568 587 567 588 0.94

10 17 0.007 0.79 10.7 2.6 1 23 637 660 637 660 0.98

11 17 0.004 0.45 11.5 0.6 1 23 697 720 697 720 0.97

12 17 0.00011 0.012 16.4 1.6 2 23 758 780 757 780 0.95

13 17 0.0024 0.27 12.2 0.1 1 23 794 816 794 816 0.95

14 17 1.6e-05 0.0018 19.0 1.0 1 23 822 844 822 844 0.99

15 17 2.8e-07 3.2e-05 24.5 2.6 1 23 850 872 850 872 0.98

16 17 3.2e-05 0.0036 18.1 3.8 1 23 878 900 878 900 0.97

17 17 2.2e-05 0.0025 18.6 0.5 1 22 906 927 906 930 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	9.4e-07	0.00011	22.9	3.1	1	23	204	227	204	227	0.95
2	17	3.3e-05	0.0037	18.1	0.2	1	23	234	256	234	256	0.97
3	17	0.18	21	6.3	0.1	2	23	288	309	287	309	0.94
4	17	4.5e-05	0.005	17.6	2.3	1	23	400	423	400	423	0.97
5	17	0.21	24	6.0	0.6	1	19	430	448	430	451	0.93
6	17	0.058	6.6	7.8	6.4	1	23	460	482	460	482	0.95
7	17	6e-06	0.00068	20.4	0.4	1	23	489	512	489	512	0.97
8	17	0.00034	0.038	14.9	2.4	2	23	520	541	519	541	0.96
9	17	0.016	1.8	9.6	0.1	2	21	568	587	567	588	0.94
10	17	0.007	0.79	10.7	2.6	1	23	637	660	637	660	0.98
11	17	0.004	0.45	11.5	0.6	1	23	697	720	697	720	0.97
12	17	0.00011	0.012	16.4	1.6	2	23	758	780	757	780	0.95
13	17	0.0024	0.27	12.2	0.1	1	23	794	816	794	816	0.95
14	17	1.6e-05	0.0018	19.0	1.0	1	23	822	844	822	844	0.99
15	17	2.8e-07	3.2e-05	24.5	2.6	1	23	850	872	850	872	0.98
16	17	3.2e-05	0.0036	18.1	3.8	1	23	878	900	878	900	0.97
17	17	2.2e-05	0.0025	18.6	0.5	1	22	906	927	906	930	0.90

Sequence Information

Coding Sequence: ATGAAGCTGCCGGTAATGTGTCGCACCTGCGACTCCACAGACACCGACAATCTTCTGAAGCTGACCACGCCCTCGAAAAAGTATCCGGACAAACTGCTCTCGGAGATTTTGACGGAGCTAACCGATATCCATGTGGACGCGAGTGGTAATCAGAAGCTGCCGCAGTGCTTGTGTAGCAGCTGCAACAAGAAACTATTGGGTGCATATTGCTTTGTAAAGCAGGCGTTGGTCGCCAACGAACTGTTGTTGAAGAACTTGAAGAACGGCTCTGCACCGTCAGCCACCGACTGCCTACAGGAGGCGCCCATGGAGCTGTGCGCTGAGCAGCATGTGGAGGTCAAGATGGAGACGGAGGACGAGGAGTGTGGCGACAACGATGTTAGTATCACCTGCTCCGACCTGCCAGAACCGGGCGAACGGGATGTGGAGAGCAAGAAGTCCGTGGATCCACTGACCATGATTGAGACGGTGAAGCTGGAGGGGGAACCACCAAGCTTGGAGAGGCCGGTGGAAGAAGAGCCCACCTCGGACTTTGATGATGAAGACTCCCTGGATAACTTGCCCCTGAATAAGCGCATCCAACAGTGGAAGTCTAGAAGAATGCCCGTTTTCAAGTGCCACGATTGCCCAAGGAGTTTTAAGAGAAACGAGTACCTAAAGCGCCACGAAATCCGTGTTCATCAGCCGGAGACCAACTGGTTCGCCTGCTCCCTCTGCGTTCGTAAGTTCAGCCGCAGCGAAGCCCTCGAGGCGCACCTGAAGGTACACAGGAACTCCAAGCGATCGGCCAACATCAGCGAGCACAAGAAGGCCAAGGCGGTGGATGTGAATCTCTGCAAGCCGCACGGCTACAAGCTCATCGAGTGCATGATCTGTCAAAGCCAGTACAATAAGATTGCGGATCTGCGAAGGCACTTGGAAGAGCATCCGGATATTGTCAGTCTGGGCGTTCGTCCAAATGTGGAGCCCAAAGAGCTGGCGGAACTGTTTTATCCCGACGCCAAGGACATGGATGAAGAGCAGTTGATCGGTGTAATCCGCAAGGACCTGGCGTCCGGCATCTATCAACGTTTCTACTCGATTACCAACCAGAGTGGGTACGAAATGGATTTGGATAGCTCGGAGACGGACAGCGATGTGGACGGTGACCCAGAGGATCAGCAGAACAAAAGGCGTCGCAAGAACCGCAGGGGTAGCTACACCTGCGAACTGTGCCAGCAGAAGTTTCCGCGGAAATATCAGCTATATGATCACCAACGGCAGAGCCACAGTTGGTCCGAGGCTCCGCATGTCTGCGGACGGTGTGATGGACGCTTTGTAAGCCTGCAACTGCTGCGGCATCACAACGAGTCGCAGTGCCGGAATGCACAGAAGCGTTTCCTCTGCCACAAATGCCCGCTGCGCTTCCGGTGGAAGCACAATCTAAAGACCCATTTCCGCGAGCATAGGATTACAAACCAAACCTTTGAATGCCCCGAGTGCAAGCGGGTCTTTGACAAAAAGAAGTCCCTCACCGTTCACCTGCTCAGCGTCCATGCCGAGGAATCGAAGCTCATACCCTGCCAGTGGTGCAGTCGCAAGTTCTATCGGCATGACTACCTGGTGAAGCATCTAAAGCGCCATGGCCTCAAGGAGCAGGACATTCCACTGGCCGAGACCTTGATAGCGGCCACTTCGCGGCCAAATGGAACGAAGAGAATCACCTGCCGGATGTGCAATCTACACTTTGAGCGGATTGTGGATCTGCGGGCTCACATCcagctggagctgaagctgtCATTGTCACTCCACCAGAGCTACGACTCGCCGCATAATTATTCGATCACGAACGAGTCCGGCTtcgagctgcagctggaggatTCGGAGACTGAGGACGAGATGCAGTCAAGCAGCGGCGGTCGTCACGTTTACATCTGTGAGCTGTGCAGTGTGCAGTGCAAACGGAAATTCGAAATGATCCAGCATCAGAGGACAATGCATCGATTCGACAAAATGCCGCATGAATGCGACGACTGCATCTTCAAGTGTGTGTCCAAGAGCATCATGGATCACCATCGGCTGGGGCAGTGCAGCAGCAAGGAGAAGATGTACACCTGCAGCAAGTGCTCCTACAGGTTTATGTGGCCCGAGAACCTGGAGCAGCACGTGCGACTGCAGCACAGCGAAACCTCATCCGTCAGCAATCCCACAGGCGACGCCAGCAGTGGCAAGCCCCGGACTGGACTCGGTGACCTGGATAAGGACGCTGGCGAAGATGGGGTACCACTGCTGCAGTGTCCGCATTGCGATCGCACCTACCAAATGAAGTCCCGCCTGAATAACCACATCCGGGATGTTCATGTAAACGGCGATCGCAAGCGCAAGGAGGCAATCAAGCGTTTCCTGTGCTCCCTGTGCGGCATGGAGACCCGATCGGCAGCCGCCCTTGTAACGCACACGCGTCGCCACACCGGCGAGAAGCCCTTCAAGTGCGATCTGTGCGAGATGGCCTTTCCCAGGCATTCGGAGTTGGCCTCCCATCGCCGAATGCACACCGGTGAGAAGCCATTCCACTGCACAGTCTGCGGCAAGGATTTCGCCCGCTCCGACAAGCTCAAGCGCCACATGCTCACCCACAGCGGCCTGAAGCCGCACAAGTGTACGTACTGCGAGAAGAGCTATCGCCAGGCCAAGGATCTGAAGCTGCATCTGCAGCAGCATACCGGCGAGTGTCCGTTCGTATGCGGCACCTGCGGCGAACGATTTATACAGAGCAGCACGCTGGAGAAGCACCGCCTGATGCGACGTCACTTTGACGAAGTAGAAGCCTGGCTAAGGCGTCAAAAATAA
Protein Sequence: MKLPVMCRTCDSTDTDNLLKLTTPSKKYPDKLLSEILTELTDIHVDASGNQKLPQCLCSSCNKKLLGAYCFVKQALVANELLLKNLKNGSAPSATDCLQEAPMELCAEQHVEVKMETEDEECGDNDVSITCSDLPEPGERDVESKKSVDPLTMIETVKLEGEPPSLERPVEEEPTSDFDDEDSLDNLPLNKRIQQWKSRRMPVFKCHDCPRSFKRNEYLKRHEIRVHQPETNWFACSLCVRKFSRSEALEAHLKVHRNSKRSANISEHKKAKAVDVNLCKPHGYKLIECMICQSQYNKIADLRRHLEEHPDIVSLGVRPNVEPKELAELFYPDAKDMDEEQLIGVIRKDLASGIYQRFYSITNQSGYEMDLDSSETDSDVDGDPEDQQNKRRRKNRRGSYTCELCQQKFPRKYQLYDHQRQSHSWSEAPHVCGRCDGRFVSLQLLRHHNESQCRNAQKRFLCHKCPLRFRWKHNLKTHFREHRITNQTFECPECKRVFDKKKSLTVHLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLKEQDIPLAETLIAATSRPNGTKRITCRMCNLHFERIVDLRAHIQLELKLSLSLHQSYDSPHNYSITNESGFELQLEDSETEDEMQSSSGGRHVYICELCSVQCKRKFEMIQHQRTMHRFDKMPHECDDCIFKCVSKSIMDHHRLGQCSSKEKMYTCSKCSYRFMWPENLEQHVRLQHSETSSVSNPTGDASSGKPRTGLGDLDKDAGEDGVPLLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKEAIKRFLCSLCGMETRSAAALVTHTRRHTGEKPFKCDLCEMAFPRHSELASHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFVCGTCGERFIQSSTLEKHRLMRRHFDEVEAWLRRQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00581676;
90% Identity: iTF_00531787;
80% Identity: -