Dnig011602.1
Basic Information
- Insect
- Drosophila nigromelanica
- Gene Symbol
- grn
- Assembly
- GCA_004149445.1
- Location
- SCDR01000059.1:119796-140218[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-19 7.5e-16 58.0 4.7 1 35 358 391 358 392 0.98 2 2 4.9e-19 2.6e-15 56.3 6.3 1 35 418 451 418 452 0.97
Sequence Information
- Coding Sequence
- ATGCCCTCCTcacatgccacgccccaagTGTGCCGGCCGCACTTTCATACGCCGCTCAGTCCCTGGCTGACCAGCGAGCACAAATCATTTGCACCCGCCAGCGCCTGGGGCATGGGTCAGTTCGCCTGCCCCCAGGAGCCGCAGGTGGAGCACAAACTGGGCCAGGTTGGCCAGAGCCATCAGACAACAGCGGCCGGCCAGCACTCGTTTCCATTCCCACCGACACCGCCAAAGGACTCCACGCCCGACTCAGTACAAACCGGCCCATCCGAGTACCAGGCCGTAATGAACGCCTTCATGCACCAGCAGGCCACGGGCTCTACCTCACTGACGGACGCCAGCTGTGCGCTGGACATCAAACCCTCCATACAGAATGGTGGCGCATCTGCGGCGCATTCCGGCAGCGCTGGACCGGCGCAATCATCGGCGCCCAAGCAGCGCGAAGGTAgtactaacaacaacaacaataccaatagctcaaatagcagcagcagcagcggtgccACCAGCGGCAACCaagcgccgcagcagcagcagcaacagcagcagcaacaacagcagcagcaacagcagaataacaccaacaacagcaacgcctcctcatccgcctccgcctccacGTCGAACGGCCTGTTCGATGGCACCGCCCAGGCGCACTACGCGGCCAACAATGCGAACAGCTACGACAGCAGCTATGCCTCGTATCACCATGCGGCGGCGCAGCATCAGGCGGCTGTTGCCGCGGCCAACATGTTCCAAAGCTCCTCcgtggcagcagccgctgtGCGGCATAGCATGGGtgccgcagcggcggcggcggcgcaccatcatcaccatcacagtcacagtcatcATCATGGTGCGTCCGTCTCCGCTGGCTCCGGCACGGGCTCCGGCTCCGGGCTgcatggcggcggcggcatgaGCGGCATGGGCAGCGCTATGAGCAGCGGCGGTCACAGCAGCTCCAGTGGCGGcgctggtggcggcggcggcggcggcggcagcggccttGGACTTGATGTGAAGCCCGTGCGCACAAAGCCCAGGACCAGTGCTGAGGGCCGTGAGTGCGTTAATTGTGGTGCCACTTCAACACCGCTGTGGCGACGCGATGGAACTGGACATTATCTGTGCAATGCCTGTGGCCTCTACTATAAAATGAACGGACAGAATCGGCCACTGATCAAGCCAAAGCGAAGACTGACGCTACAGTCGCTGCAAAGCGCGGCCAAGCGGGCGGGCACATCCTGCGCCAATTGCAagaccacaaccacaaccctTTGGCGGCGCAACGCGAGCGGCGAGCCCGTGTGCAATGCCTGCGGATTGTACTACAAGCTGCACAATGTCAATCGTCCACTTACCATGAAAAAGGAGGGCATTCAGACGCGTAACCGCAAGCTTAGCTCCAaatcgaaaaagaaaaagggctTGGGCGGCGGCTGTCTGCCAATGGGCGGCCATTTGGGCATGGGCGATTTCAAGCCACTTGATCCGTCCAAGGGCTTTGGCGGCGGCTTCTCGGCCTCAATGGCACAACATGGACACCTTTCCAGCGGGCTGCATCCGGCACATGCGCATATGCATGGCAGTTGGTATACCGGCGGCATGGGTGCACTGGGCGCCTCTGGTGGACTGCAGGGTGGCTTCTCCACGGCCGGTTCGCTGGGTGGCGGCGTTGTGCCCCACTCTCAGCCCTATCACTTGGGTCTCAGCTCAATGGGCACTTGGCGCACTGACTATACGTGA
- Protein Sequence
- MPSSHATPQVCRPHFHTPLSPWLTSEHKSFAPASAWGMGQFACPQEPQVEHKLGQVGQSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPSEYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGGASAAHSGSAGPAQSSAPKQREGSTNNNNNTNSSNSSSSSGATSGNQAPQQQQQQQQQQQQQQQQNNTNNSNASSSASASTSNGLFDGTAQAHYAANNANSYDSSYASYHHAAAQHQAAVAAANMFQSSSVAAAAVRHSMGAAAAAAAHHHHHHSHSHHHGASVSAGSGTGSGSGLHGGGGMSGMGSAMSSGGHSSSSGGAGGGGGGGGSGLGLDVKPVRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPMGGHLGMGDFKPLDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASGGLQGGFSTAGSLGGGVVPHSQPYHLGLSSMGTWRTDYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00565029;
- 90% Identity
- iTF_00496245;
- 80% Identity
- -