Dnig005728.1
Basic Information
- Insect
- Drosophila nigritarsus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035044305.1
- Location
- JAWNMF010000250.1:18917-23576[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-06 0.013 14.9 11.1 1 38 32 69 32 79 0.84 2 3 2.7e-39 2.7e-35 122.3 13.5 87 299 73 282 60 283 0.90 3 3 0.0023 23 4.3 6.0 126 167 308 349 293 353 0.80
Sequence Information
- Coding Sequence
- ATGAGTTCGTACACCTCATCGGTTGGCCATAGAAGGCGCGCGCCCGTCGGACACTTGGATGAAGAGCACGTACTCGATCGCATCAACAGAGacgcaGAAGAGCGTCACACAAAGAAGAGGCAGGCGCGTGAGGAGGCGCGCCAAATTCGATTGGAACAATTAGAGCGTCAGATTCGTGCCAACGATGACTCAGACTTGCGGAGTCTTGCCGACGACGATAATGCTGAAAAGGTGACGGAATTGGAGAACAAGTTTCAGCGCGCCATGCTGTTGTATTCACAGTTGGATAATGAGAAGTCGGCGCTATTGTACGAGATTGATTTGTTGAAGGATGAGCTGGAGGAGAAAGACCAGATTGTTTATCAAGTGGGAAGAGAGAATCGCGATCTCACTAGtgaAGTGAAACTGCTGAAGCGAACTTTGGAGGGAATGCAAACAACACAGCAATGTCTGAAAGCCGAAATTGCACAACGCGACCACTTAATACAGGAGAACggttttgttcttgttgaaCAAGAACCGCCGGATGAGACGTGCCAATCGAGCGACGGAAGCGGaagATTGGGTCCCATTCTTTTTCCCCAGCAAACGTTAACTCTAGTCGAAAAAACCATCCCCGGGTCGTCTTCCATTGATGAGAAGATTCGCAAACTAGTGGACATGaacaaaaaaattcgtcAACAAGTCGAAGAGGCCGAAAAGACTTTGTACGCCAGGAGACAGCGTTTTCTCGAGTCCCACTCGATCCAAGTGAAAGGCAACTTTAATGACGAATCACAACgTGACGCAGCAAAGCAGCTGGCCGAATTGAAGCTTAAGTTCCAAGAAGTTGAGCGCGAAAACACCGGGCAGCAAGGCAATatcaTTCGGTTAGAGGGTCAATTGAAAAGGTTCAAAACGACGTCGGAACAGACCGAAAAGGAGTGCACCGAATTGAAAACGCAAAATCGACAACTTAAAAAAGACATACGTGAAAAAGAGCGGTTGCTTGACGACGCAAAAGAAACGAATAATCATTTACAGAGTCGGCTAGAGAAGTTGAGAACTTCGAGGAGGCAAGTGTAA
- Protein Sequence
- MSSYTSSVGHRRRAPVGHLDEEHVLDRINRDAEERHTKKRQAREEARQIRLEQLERQIRANDDSDLRSLADDDNAEKVTELENKFQRAMLLYSQLDNEKSALLYEIDLLKDELEEKDQIVYQVGRENRDLTSEVKLLKRTLEGMQTTQQCLKAEIAQRDHLIQENGFVLVEQEPPDETCQSSDGSGRLGPILFPQQTLTLVEKTIPGSSSIDEKIRKLVDMNKKIRQQVEEAEKTLYARRQRFLESHSIQVKGNFNDESQRDAAKQLAELKLKFQEVERENTGQQGNIIRLEGQLKRFKTTSEQTEKECTELKTQNRQLKKDIREKERLLDDAKETNNHLQSRLEKLRTSRRQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00440345;
- 90% Identity
- -
- 80% Identity
- -