Dnig008122.1
Basic Information
- Insect
- Drosophila nigritarsus
- Gene Symbol
- retn
- Assembly
- GCA_035044305.1
- Location
- JAWNMF010000256.1:8186948-8213709[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-26 1.1e-22 80.4 0.0 2 89 331 416 330 416 0.96 2 2 6.1 9.5e+03 -2.8 0.3 21 39 580 603 552 617 0.52
Sequence Information
- Coding Sequence
- ATGCTCAGCAGTGTAGCCGCACCAATACCCAAGCACAGCGAGCACAAACCCGGACCCGTGCCCGTGCCCGTGCCTGTACCCGTGCCCAAGTCATACCTGGGCTCATGCGAGTATCGCGTATCTCTCCAACTATACAATTCCCACGGTGATCGTACGGATGACGAGATGCGCGACTGTGATTCCGTTGACGGGGAGCATCATCAGCTGAGCGCCAAGGCGGCAATTGCAGCCCGGCTCAGTCACACAGTTGCCGGCGGCGCTGGCCTCAACTTTGCCAGTCCAGAGCAGCAAACAGATCTGCCACTCAGccatcatcatcagctgcCGCCGAATCATCCGCTTAACGCCCTCGGCAGCTTTATGAGCATCGGCGGCCTACACAGCATTCCAAATCTGCAGCACAGCGATGTCCTCGAGAAGCTCAAGATGCAAGTGCGCGACATGAAAGTTGGCCTCATGGAGCAGGACTATGCAGCGGCAGCTCATGCCGCAGCCTTTGGCGCCAACATGCTGCCCACAACGATCAGTACGGCCTTTCCGCTGCCGCACAATTCGGTGGCAGtggctgcggcagctgcaTCCTTTGGCCATGCCACAAATGTGAATGCCAATCCCGTGCCGCCAGCCAGCAATGGCGCCAGCTACAATGGTGGGCCCAGTGGTGGACATgcaacaggagcagctgcTAGCATTGGCAACAGTGGAGGCGCAGGAGCAGGAGGTGCTggaggcaacagcagcggtgttaacaacaacaacaacaacaacaatagcaacaacaacaatgctggcAATGGTCATCCCTTTTCATTTGCATCGCCAACAGCGCCGAGCAGCACCAAAGAAGCGCGCCACTTTGCAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGAtgatttgttttcgtttatGCAAAAGCGAGGCACGCCCATCAACCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTATATGAGCTATATAATCTGGTGATAGCTCGTGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCGGCATTCACCCTGCGCACCCAATACATGAAGTATTTGTACCCCTACGAGTGCGAGAAGAAGAACCTCAGCACTCCCGCCGAACTGCAGGCGGCCATCGATGGCAATCGTCGCGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCCATGCACAGCCAGATGCCACTGACAACAATTTCGCGACCACCGTTGCCTGGGGGCATGCAACAGATGTCGCCACTGGCGCTGGTCACACATGCCGCGGCTGCGAACAATCAGCAGGCGCAGGCAgcggccgcagcagcagcagcacatcgACGGCTGATGGGCGGGCCCGCCTTTGGTCAGATGCCGAATCTGGTGACGCAGGAGATTGAGAACCGTATGATGGAATATCTGCAGCTCATACAGGCgaagaaggagcagcagcagcagcaacagattGCGCCAATTCTGGGCGCCACACATccccaccagcagcagcagcagcaacaatcgctgcatcatcaccaacaacaacaacaacaacaacaacagcagcagcagcagcgacagcgctCACAAAGCCCCGAGCTGAGCACACGCGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCCTTGAACCTTTCCGATTCGCCGCCAACTTTGAATTTGAATCACATAAAACGGGAAAGGGATCGCGATCCGACGCCAGAACCAACGGATCTGGAGGAAACGGCCCATCAGCCGCCACCGGCGAAACGTGTGGGCAGCGGCCTAATGCCGCCCGGATTTCCTGCCAACTTTTACTTGAATCCCCACAATATGGccgctgtggcagcagcagccggttTTCATCACCAGGCCGCcaacaatcatcatcatcagcagcagcaacagtcgcagcagcaggatGCAGCGTCTGAGGGTGAACCAGAGGATGAGTATGGCAATGGGGAGCACAACACTACCGGCAACTCATCGTCGCTGCATGATGACAGTGAGCCACAGCAGCTGAATGGACATCACCTCCACGATCATCATCATGACCATCACGATCTGCATCATGATCTTCATCAtgagcatcatcatcatcagaatCATCTGGACAAGTCGGATGACTCGGCCATTGAGAATTCACCCAGCAcatcgacaacgacaacaacaacaacatcatccaCATCCAAAGCGCATCGTCACAGCTCGCCGGTGTccacaaaaaagaagagcagcggcaactgcaacagcagcagcaccaccaccaacaacaagacGCAGTCCTTGTCGTGTGCGAAGGatgcaggcaacaacagcagcaacgccaaCAGTTCCAGCGATGTCAAACTGAATCCCCTCGAGACGCTCAGTCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAACGGCACCAATGCTAATGGAGAGCAGCAGTTGATTGTCAATCTCGAGCTAAATGGCATTAAGTACTCGGGTGTGCTGGTGGCAGCCACCCAAGCAGCggcagttgcagcagccaaGTTAGAGGCAGGTCAAACTGAGCGGGAGCAGGCAGAgacgccagctgctgctgctgaggagCCAGCAGTGAGGAACAGCAGCATCACTGAGCATGAGCTCAAGCATGAAAACAACCAGGAACTTGGCCAGAACGAGGCAATTGATGAGGAAACAAcgcaggaacaacaacaacaacaacagcaacaacaactcacaGATGACATTGTGAATGGAGCGAGTGCTGTTGGGGCGGGAATTGGAGGGGTTGGCGTTGGGGGTGCAAGTCTGCTGAAGGATGCTGTGGTCAGTTCATAG
- Protein Sequence
- MLSSVAAPIPKHSEHKPGPVPVPVPVPVPKSYLGSCEYRVSLQLYNSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMSIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISTAFPLPHNSVAVAAAAASFGHATNVNANPVPPASNGASYNGGPSGGHATGAAASIGNSGGAGAGGAGGNSSGVNNNNNNNNSNNNNAGNGHPFSFASPTAPSSTKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHSQMPLTTISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQQIAPILGATHPHQQQQQQQSLHHHQQQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERDRDPTPEPTDLEETAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHQQQQQSQQQDAASEGEPEDEYGNGEHNTTGNSSSLHDDSEPQQLNGHHLHDHHHDHHDLHHDLHHEHHHHQNHLDKSDDSAIENSPSTSTTTTTTTSSTSKAHRHSSPVSTKKKSSGNCNSSSTTTNNKTQSLSCAKDAGNNSSNANSSSDVKLNPLETLSLLSGMQFQVARNGTNANGEQQLIVNLELNGIKYSGVLVAATQAAAVAAAKLEAGQTEREQAETPAAAAEEPAVRNSSITEHELKHENNQELGQNEAIDEETTQEQQQQQQQQQLTDDIVNGASAVGAGIGGVGVGGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00511055;
- 90% Identity
- iTF_00573828;
- 80% Identity
- -