Dneu015592.1
Basic Information
- Insect
- Drosophila neutralis
- Gene Symbol
- retn
- Assembly
- GCA_035044385.1
- Location
- JAWNME010000533.1:6043279-6070112[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-26 1.1e-22 80.4 0.0 2 89 348 433 347 433 0.96 2 2 2.4 4.3e+03 -1.7 0.3 13 13 584 584 547 634 0.55
Sequence Information
- Coding Sequence
- ATGGGCCAACTACAAACTGGGCAAGCAACGCTTGAATCGAGCACGATAAACATGCTCAGCAGTGTAGCCGCACCAATACCCAAACACAGCGAGCACAAACCCGGACCCGTGCCCGTGCCCGTGCACAAGTCATACCTGGGCTCATGCGAGTATAGCGTATCTCTCCAACTATACAATTCCCACGGTGATCGTACGGATGACGAGATGCGCGACTGTGATTCCGTTGACGGGGAGCATCATCAGCTGAGCGCCAAGGCGGCAATTGCAGCCCGGCTCAGTCACACAGTTGCCGGCGGCGCTGGCCTCAACTTTGCCAGTCCAGAGCAGCAAACAGATCTGCCACTCAGccatcatcatcagctgccGCCGAATCATCCGCTTAACGCCCTCGGCAGCTTTATGAGCATCGGCGGCCTACACAGCATTCCAAATCTGCAGCACAGCGATGTCCTCGAGAAGCTCAAGATGCAAGTGCGCGACATGAAAGTTGGCCTCATGGAGCAGGACTATGCAGCGGCAGCACATGCCGCAGCCTTTGGTGCCAACATGCTGCCCACAACGATCAGCACGGCCTTTCCGCTGCCGCACAATTCGGTGGCAgcggctgcggcagctgcatcCTTTGGCCATGCCACAAACGTGAATGCCAACCCCGTGCCGCCAGCCAGCAATGGCGCCAGCTACAATGGTGGGCCCAGTGGTGGACAtgcaacaggagcagctgcCAGCATTGGCAACAGTGGAGGCGCAGGAGCAGGAGGTGCTGGAGGCAACAGCAGTGgtgttaacaacaacaacaacaacaacaatagcaacaacaacaataacaacaacaatgctggCAATGGTCATCCCTTTTCATTTGCATCGCCAACAGCGCCGAGCAGCACCAAAGAAGCGCGCCACTTTGCAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGATGATCCCAAGCGTAAGGAGTTTCTCGATGATTTGTTTTCGTTCATGCAAAAGCGAGGCACGCCCATCAACCGCCTGCCCATAATGGCCAAGTCGGTGCTGGATCTATATGAGCTATATAATCTGGTGATAGCTCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTACATCTGCCATCGAGCATCACCAGTGCGGCATTCACCCTGCGCACCCAATACATGAAGTATTTGTACCCCTACGAGTGCGAGAAGAAGAACCTCAGCACTCCCGCCGAACTGCAGGCGGCCATCGATGGCAATCGTCGCGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCCATGCACAGCCAGATGCCACTGACAACAATTTCACGACCACCGTTGCCTGGGGGCATGCAACAGATGTCGCCACTGGCGCTGGTCACACATGCCGCGGCTGCGAACAATCAGCAGGCGCAGGCAgcggccgcagcagcagcagcacatagACGGCTGATGGGCGGGCCCGCCTTTGGTCAGATGCCGAATCTGGTGACGCAGGAGATTGAGAATCGCATGATGGAATATCTGCAGCTTATACAGGCgaagaaggagcagcagcagcagcaacagattgCGCCAATTCTGGGCGCCACACATccccaccagcagcagcaacagcagcagcagcaacaatcgctgcatcatcaccaacaacaacagcagcagcagcagcagagacagcGCTCACAAAGTCCCGAGCTGAGCACACGCGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCCTTGAACCTTTCCGATTCGCCGCCAACTTTGAATTTGAATCACATAAAACGGGAAAGGGATCGCGATCCGACGCCAGAACCAACGGATCTGGAGGAAACGGCCCATCAGCCGCCACCGGCGAAACGTGTGGGCAGCGGTCTAATGCCGCCCGGATTTCCCGCCAACTTTTACTTGAATCCCCACAATATGGccgctgtggcagcagcagccggttTTCATCACCAGGCCGCcaacaatcatcatcatcagcagcagcaacagtcgcagcagcaggatgCAGCATCTGAGGGTGAACCAGAGGATGAGTATGGCAATGGGGAGCACAACACCACCGGCAACTCATCGTCGCTGCATGATGACAATGAGCCACAGCAGCTGAATGGACACCACCtccaccatcatcatcatgaccATCACGATCTGCATCATGATCTTCATCAtgagcatcatcatcatcagaatCATCTGGACAAGTCGGATGACTCGGCCATTGAGAATTCACCCAGCAcatcgacaacgacaacaacaacaacatcatccaCATCCAAAGCGCATCGTCACAGCTCGCCGGTGtccacaaaaaagaagagcagcggcaactgcaacagcagcagcaccaccaccaacaacaagacGCAGTCCTTGTCGTGTGCGAAGGatgcaggcaacaacagcagcaacgccaacagTTCCAGCGATGTCAAACTGAATCCCCTCGAGACGCTCAGTCTGCTGTCGGGCATGCAGTTTCAAGTGGCACGCAACGGCACCAATGCTAATGGAGAGCAGCAGTTGATTGTCAATCTCGAGCTAAATGGCATTAAGTACTCGGGTGTGCTGGTGGCAGCCACCCAAGCAGCggcagttgcagcagccaaGTTAGAGGCAGGTCAAACTGAGCGGGAGCAGGCAGAGACgccatctgctgctgctgctgaggagCCAGCAGTgaggaacagcagcatcaCTGAGGATGAGCTCAAGCATGAAAACAGCCAGGAACTTGGCCAGAACGAGGCAATTGATGAGGAAACAAcgcaggaacaacaacaacagcaacaacaactcacaGATGACATTGTGAATGGAGCGAGTGCTGTTGGGGCGGGAATTGGAGGGGTTGGCGTTGGGGGTGCAAGTCTGCTGAAGGATGCTGTGGTCAGTTCATAG
- Protein Sequence
- MGQLQTGQATLESSTINMLSSVAAPIPKHSEHKPGPVPVPVHKSYLGSCEYSVSLQLYNSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMSIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISTAFPLPHNSVAAAAAAASFGHATNVNANPVPPASNGASYNGGPSGGHATGAAASIGNSGGAGAGGAGGNSSGVNNNNNNNNSNNNNNNNNAGNGHPFSFASPTAPSSTKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHSQMPLTTISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQQIAPILGATHPHQQQQQQQQQQSLHHHQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERDRDPTPEPTDLEETAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHQQQQQSQQQDAASEGEPEDEYGNGEHNTTGNSSSLHDDNEPQQLNGHHLHHHHHDHHDLHHDLHHEHHHHQNHLDKSDDSAIENSPSTSTTTTTTTSSTSKAHRHSSPVSTKKKSSGNCNSSSTTTNNKTQSLSCAKDAGNNSSNANSSSDVKLNPLETLSLLSGMQFQVARNGTNANGEQQLIVNLELNGIKYSGVLVAATQAAAVAAAKLEAGQTEREQAETPSAAAAEEPAVRNSSITEDELKHENSQELGQNEAIDEETTQEQQQQQQQLTDDIVNGASAVGAGIGGVGVGGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00511055;
- 90% Identity
- iTF_00573828;
- 80% Identity
- -