Dneo001815.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila neoperkinsi
Gene Symbol
sip1
Assembly
GCA_037043555.1
Location
JBAMBG010001212.1:508-3243[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.9e-89 2.3e-85 286.5 16.7 4 275 433 708 430 708 0.97
2 2 0.38 2.3e+03 -2.1 0.0 245 269 723 747 714 763 0.49

Sequence Information

Coding Sequence
ATGTCGGACAACGAATATGAGCGCTTTGAAATAACGGACTATGATTTGGACAACGAGTTCAATATAAATCGACCACGTCGTCGTCAAACCAAACATCAGCAAATCTACgGCATTTGGGCCGATGACAGCGACAATGAGAGCGAGGGAGAAGCCAGCGGTCGACGTGGCGGTAGGCGTGGTCTGGGCGGCGGCACTGCCAGCAAAGCAAAGGATTACACGGCACCCGTCAATTTCGTTGCCGGCGGCATTCAACAAGCTGGCAAACGgccaaagaagaagcagctggaggaggGCACAAACAAAGATGAGGCTGCAGCTGGTGATTCGGAGGACAGCGACGGCAACGAGGCACGTCCATCGTTTGGGGGAAAGCAGCCGCAGCTGATGGACAACAACGAGGATTACAGCTCGGATAGCTCCGATGGTGAAGAGAATAAgagggagcagcagcagcaacagatgcGGTCCCGGAACATTGCTGGACTGCGTCACAAATCGCACATTGCAAGTGGTCGGAATGTAGGTGCCTGGGAGCAACATACGCGTGGCATTGGcgccaagctgctgctgcagatgggCTATGAGCCGGGCAAGGGATTGGGAAAGGATCTGCAGGGCATCCAGCAGCCGGTGCAGGCGCATGTGCGCAAGGGAAGAGGTGCCATTGGTGCCTACGGACCGGAGACGGCGGCTAGCATTGGCGGCCAGTCAAAGCCCCCGAAAGAAGACGACGACATTAAAGAGGCCAGGGAGTTCAAGGAGCAGCTGACCAAGTGGAAGAAAGTCGGCGTCGAGCCGCGTGAGAAGTCCGGCAAACAGCAGCGCTACTACTATAAATCCGTTGAGGAAGTCATTGCTAAGAGTCTCAAGGACAACCACTTGCTGCCCGTAAAGCTGGCCAAGCAGCTGGGCAATGTGCCCGTCATCGACATGACCGGACCGGAGCGACGCGTCCTCAGTGGCTACCATGCCTTGGCCCAGAGCAAGATCACGCCCGAGGAGACGCTTTACGATGAGCAGCTGCCGTCGGGCGGAGGAAAAAGTTCACCGATTAGTGTGTTTAGCATGCCGGAACTGGCGCACAATATGTCGCTGCTGGTTGGCCAATGCGAGCAGGAGATCATTAACATCGACAAGGAGAAGCGGGAGGGCCATGATCTGCATGCAGCGCTGGAGCAtgagcatcagcagctgctggaacTGGTGAGTCTGGAGCGCAATCACATGAGCACTTTGGAGCAGGTGCTCGCTCGTGTCGATCAGCTCAGCGAGAATCCGGACTTGACCATGTCGCATGCGGAGGAGCTGTTTCTCGACCTGCAGCGCGACTATCCCGCCGAGTTTGAGGAGTTCGGCATGGAGGATATGGCTGGCGGCGTCATAGCTCCATTGCTGCGGCGGGAACTAGCTGATTGGCAGCCTCTGGAGAAGCCCATGCAGCCGGTGGAGATGATAAAGCGTTGGCGCAACATATTACAGAAGGATGAGGATCAGGCGCCGGCATcggtggagcagctgcagctgcagcaatcgCGCAACGTTTTCGATCCATACTCCTCGCTTATCTGGGTCGGGGTGATGCCCTCGATTCGGACGAGCGCACTCAACTGGCAGCCCAAGGAACATGCCATGATGGCTGCTTTGCTGGACGCATGGGCGCCAGTGTTGCCCACGTGGGTGTTGGACTCGGTGCTGGAGAAACTGGTGCTGACCCGCCTGAAAATTGGCGTCCGCGATTGGGATCCGTTGACGGATACGGTGCCCATACACATTTGGATTTTGCCCTGGCATGGACTGCTGGGTGAGAAGTTGGAGGAGTCTGTCTATCCGCAGATACGCAGCAAACTGGGTGTGGCATTGGAGGCTTGGTCACCACAAGATCGGTCCGCCCGGGCCATGCTCACACCGTGGCAGACGGCGTTTCCCGAGGAACAGTTGCTGCAGTTCCTGTTGCGTCACATTATACCCAAGCTGCAGGCGGTGCTCGCCGAGTTCATCATCAATCCGCTGCAGCAGGACTTGGAGCTGTGGCATCAGGTGTGGGAATGGCACGAACTAATACCCGCCGCCCACATGGCCCAGCTGCTCGATAAGTATTTCTTTCCACGCTGGATGCAGGTGCTCGTCATGTGGCTGAATCAGTCGCCGGACTATGCCGAAATCTCACGCTGGTATGCCGGCTGGAAGAGCATGTTCAGCGAGGCCATCTTACGCGAGCCCTGCATCAAGGAGCATCTGCGTCGCGCCCTCGACATGCTGCACCGCGCCACGGATGCGGTTCTCCAACCCACTTCGGCCCCGCCACCGCCTATGCCACCAGCGCCCGCCCCTGTGTTGCTCGCCCCCGTAATGCTCATAGATGTGGCACCGCCCGCTCAGCTGGAGTTCAAGGAGCTCGTCTCGCAGAAGTGCGCCGAACTGGGCATCATATTCGCCCCATTGCCAGGACGACGCGAATTGGGCAAACAGATTTATCGAGTGGGTAAACTATTCTGTTACATCGATCGCAACGTTTGCATGCTGAGCGACGGCAGCTTTCAGAGCTGGCAGCCTGTGGCCCTCAATCAACTCCTGGAGCGTGCACAAACTGGCCTCATCTAA
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRQTKHQQIYGIWADDSDNESEGEASGRRGGRRGLGGGTASKAKDYTAPVNFVAGGIQQAGKRPKKKQLEEGTNKDEAAAGDSEDSDGNEARPSFGGKQPQLMDNNEDYSSDSSDGEENKREQQQQQMRSRNIAGLRHKSHIASGRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIQQPVQAHVRKGRGAIGAYGPETAASIGGQSKPPKEDDDIKEAREFKEQLTKWKKVGVEPREKSGKQQRYYYKSVEEVIAKSLKDNHLLPVKLAKQLGNVPVIDMTGPERRVLSGYHALAQSKITPEETLYDEQLPSGGGKSSPISVFSMPELAHNMSLLVGQCEQEIINIDKEKREGHDLHAALEHEHQQLLELVSLERNHMSTLEQVLARVDQLSENPDLTMSHAEELFLDLQRDYPAEFEEFGMEDMAGGVIAPLLRRELADWQPLEKPMQPVEMIKRWRNILQKDEDQAPASVEQLQLQQSRNVFDPYSSLIWVGVMPSIRTSALNWQPKEHAMMAALLDAWAPVLPTWVLDSVLEKLVLTRLKIGVRDWDPLTDTVPIHIWILPWHGLLGEKLEESVYPQIRSKLGVALEAWSPQDRSARAMLTPWQTAFPEEQLLQFLLRHIIPKLQAVLAEFIINPLQQDLELWHQVWEWHELIPAAHMAQLLDKYFFPRWMQVLVMWLNQSPDYAEISRWYAGWKSMFSEAILREPCIKEHLRRALDMLHRATDAVLQPTSAPPPPMPPAPAPVLLAPVMLIDVAPPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLSDGSFQSWQPVALNQLLERAQTGLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00513447;
90% Identity
iTF_00482221;
80% Identity
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