Dneo011854.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- bab1
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000001.1:16000865-16003974[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-18 1e-14 54.0 0.0 1 43 55 98 55 100 0.95 2 2 2.9 6.1e+03 -2.9 0.2 7 18 182 192 181 192 0.81
Sequence Information
- Coding Sequence
- ATGATGGAAAATTCTCATGCTTGGATGGGTGCCACCGGATCCACGCTGGCAGCAGATAGCTATCAATATCAATTGCAATCGATGTGGCAAAAATGCTGGAATACCAATCAAAATCTAATGCATCATATGAGATTCCGTGAACGTGGTCCATTGAAATCATGGCGACCCGAAACTATGGCTGAAGCCATTTTTAGTGTCCTCAAGGAGGGTCTCTCTCTATCGCAGGCAGCACGCAAATATGATATACCGTATCCCACCTTTGTTCTATATGCAAATCGTGTCCATAATATGCTGGGTCCATCTATTGATGGTGGTCCCGATTTAAGGCCCAAAGGTCGGGGTAGACCACAACGCATTCTTTTGGGTATATGGCCAGATGAGCATATCAAGGGTGTCATTAAGACTGTGGTATTCCGTGATGCCACCAAAGACATGAAGGATGATAGTTCTCTGGGTGGACTAGGTGCTCATATGCCGCCCTATGGTCGCCATTCGCCCGTATTTCCTTTGCAGGACATGAGCCTAAGTTATCCGGGAGCTAGTGCCGCAGCACTAGCTTGTTCGAATGGTATGGGCGGCGGTGGAGCTGGTGTGGGAGGTGGCCCATCTGTTGTCGGTCCTGGTCCGGATCAGGGTCAAATGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGAAGCGGGGCCGCCACCAGGACTCTTCAATTTGCCACCACATCTGGCTGGCAGTGGTCCGGTGTTGGGTAGAGGTAGCAGCATATCGCCAGCATTGAGCAGCGGCTCGGGGCCAAGGCATGCGCCACCCTCATCACCCTGCGGTCCCGCCGTGCCTTTTCTAGAGTTAATTTTTAATTAA
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDATKDMKDDSSLGGLGAHMPPYGRHSPVFPLQDMSLSYPGASAAALACSNGMGGGGAGVGGGPSVVGPGPDQGQMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAGPPPGLFNLPPHLAGSGPVLGRGSSISPALSSGSGPRHAPPSSPCGPAVPFLELIFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00618322;
- 90% Identity
- iTF_00577704;
- 80% Identity
- -