Dnav002691.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila navojoa
Gene Symbol
MBD-R2
Assembly
GCA_001654015.2
Location
NW:1976907-1981464[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.8e-22 8.6e-19 66.4 0.1 4 76 452 522 449 523 0.93

Sequence Information

Coding Sequence
atggGACGCCGCTGCTGCGTTGCTGATTGCCCCTCGACTTCGCGTCTGTTTGAGCACCACGGCGTAACATACCACTCGTTTCCGATGGACGCCGTCATTCGTGCTATTTGGATTAAGAACTCGCGCATTAGTCTGGACCGGCAAATCACAAAGAGTGTGCTTGTATGTTCACGTCATTTTCGACGTCTTGATTTCAATACTATTAAAAATGGCAAGTACTTGCTGAAGCCGCGCGTCTTCCCCACTGTCTTTCCGTGGGGAAAAATGGAGCCCGCCGAGATAGAGGCTGACCATCGGGCCTTGCAGCAGGCAACCTTGGATGGCTCTGGAGTGAGCAGTTCCGCgaacagcgccagcaacgAGGATGTTATTAAGGCAACCGTTGACAAAATTGTTGCCCAAATATTGTCCGAGTCAGCTGAGCGTGATGCTGCCGATCGTAAGGCTAAAGCCGAGGCAGCCgctaaagctgaagctgaaaccgaggcaaaacaaaaggaagcagcagcaaccaagGAAGCTGCCGTCGACTCCGCACTTGTTGCCTCATCTGCAGAAGGCACAACTGCTACTTCCTCCAACGAGACAACAGCCGCTGTAACTGATTCGGCTACTGAAGCAGTGCCTGCTGCTAGCAACACGGGCTCCCCACTTTCGAATTCTCCACCCAAATATGGCTTGCCCACAAACATTGCGATTGGCGCTCGTCTAGAGGCGTTGAGTGCTGATGGCGCTTGGCTTCCGGCACGTATTGTCGAGGTCAATGAATCGGAGCAGACATTACTAATCCGGTTCGagcgcaacaacaagctgAAAGTGTCACCCTCGACAAGCGGTGGCAACCAAGAATGGATCGGGTTCAAATCGGATCGCCTGCGTCAGCGCATCAGCTCGCGCGTCTTACCCATCTTTGAGTTGGAGGAGAAATGCATGGCGCGCTGGTCGGGACCACGGAAATTTCCGGGCACCATCAAAAAGCTGCTGGGCAACGACACATACGAGGTGCTATTCGACGATGGATACACAAAGAACGTCCGTGCAGTGCACATGAACAAGCTGCCTCGCCAGGTTTTGGCCAACATTGAGCAAGATGCTGACACGCAATCAACAGActctgctccagctgcagtcgcagtGAAGAGGCCCAGCACTGGAGCCACCAGCACCGGCAAGAAGGCAAAGGTGACTCCGCCGCGCAAAGATTGGCCACTGCTGGACATGTCCAATTTGGATTTAGCCGCTTTGGGATTGCCGGAAATCCCACATGATGGGGAGTGGACATGCCATTGGGTGAACGATCAGCCGATCGGCACAGAAGGCTATCTGATTGTCGGGGAGCACCAGAAGCCGACGGTGATTGTTCACGACTGGCGATTGCCGCCTGGCTGGATCAAGCACATGTACCAGCGCTCAAATGTGCTGGGCAAGTGGGATGTCATTTTGGTTTCGCCCAGTGGAAAACGTTTTCGCTCCAAGTCCGATCTGAAAGTGTTCTTGGAGTCGCAGGGCTTGGTCTATAATCCGGATGTTTATGACTTTAGCATTCATCGCCGGCGTGCCAAAGACATTAATGCATACGTCTACACACATGACTACAGTccacagcagccagcaaaacCCAAGCCGATGGACATGTCCGTggacacaacagcaacagagtcACAGGATCAAAGTACCAGCAAGCTGttgacagccacgcccacatcaaCGCCTATGTCACCGATGGCCACACGCCGTGGAGCAGGGGTGGACAACCAGTATATGGAAACACCGGTGGCCTCACTGATGCCTCCTGCGGAGCTAATGTCTCCCTCACCACGTGCCCCAGACAATGAGGCAATGCCTCATACAACCGAATCGGCCGATGCCACCTCTGTGCTAGCTTTGGATGAAGGCACCGTGCTGGAAGATGGTTACGTATATATTGGCGGATTAAAGGTACAGATAACAgataatttgtttgtgtgcccAAGCGAGGGATGCGGTAAAACATGCCGCAAGGAGCACATTCTGCAAATACACATACGACACTATCACAAGGAACTAGCACAACACTTCAGCCACTGTCCGAAGATGCAGGAATTGGCTGTAAAACGCACGCATCCATCTTCGATTGAACAAAATGAGCAAACACCGAAGAACCAAATACCCAATCAACAGTTCTTTAATAAGTTGCATCAACAGGACTTACAACAGTCCCGCTCTTTTCGACGTCAGACAGCTGTTACGGATACATCGCCCACAGTCCGTGACAACTCGCCAACTGTTTCGCCTAGTAGTCGATTGCTATCACCCAAGGTTGAGACGCCTACGACATCTAAAGTTTCACCACAGGCAACAAGCGCTACTCCTGAAGCTGCTACTTCTACTGCTGCACCAGCTCCTGTCGTGGCACCACCGCCTGTAGAAGTTTCGCCTATTCCAGCAGCACAGGAGCCGAACAAATCTAGTACACCAGTCGTCGTAAACCGGGCCACCAAGCGCGTGCGTGCTACATCCAACAAGCGTTCATCTGGCTCCCGTAAAAGCAGCCGGCAACGTACCCAACGTCGCTATGCAAACGTCTCGAACGAGGATTTGCCAGCGTCAACCAATGCCCACAACTCACCAGCATCTGGAGCAGATTGCGAAGATACCCGTCAGTCGATaagcacacccacacccacacccgaTGTTCGTAATGATGCTAAGAAACGTCGTGTCGCTCTATCTGGAACCCCGGCTAGTTCGCCAATCATCGATTCGGCATCAACGCCTTCGTCAAACGATGTGGTAGATATAAATGCAGCATTGGCGCCACCGCCCCCACAACAGGCCAGTCAGACGCCTCAGTACATCAAGGAGAACGGCGAGCTTATACGTATAGTGCGCATGAGGCAGGAGGAAatcataaattgcatttgtgaaTATGGGGAAGAGGATGGCCTTATGATCCAATGTGAGCTGTGCCTCTGTTGGCAGCATGGTGCTTGTAATGGCATTGTCAAAGAGTCGGATGTACCAGATAAATACGTCTGCTACATTTGTCGCAATCCGCCGCGTGTTCGTGATTCGATGCGCTTCAAGCATGATCAGGACTGGCTCTTCGAGGGCAAGCTGCCTGTTGCTGGGTATCATACTCCAAATCCCCAGGCACCCAAAAAGTTCGAGTTGCTAAAACGATCTCACACACTTACGGGCAATTTACTAGATGCTAAACGCTCAATGCATTCCTTATCGGTGAAGATCAATATTGCTCGCAATCGTTACCATCCCAAGCTATATCTGTGGGCTAAGAAGTGGGACGAAGATCAGGCTGAGAACGCAACCACACCTGTGAAACGTCCAAAGGCCGAACAATCCGACTGGCCGCACGTGCCGCAACCGGAGGCTGCAATCGATCCAGAGGAATGTCAGTACCGTTTGATAGAACACGTTAAGATACAGCAATCCCTGTTGATGAATCGTCTCAATGAGATAGAAGGTGAAATAGACGaGCTTGAAAAAGAAGATACTATGACCGATTTGAAAGATGCAAATATGTCCACCACCAAAGAAGCCATGGCAACGTTTATAAAAGAGTTGGAAACACTAAAGCGTCTTGCTAATCTCAACAAGGTGGCCAACATGAAACAGGCCCTAAAGAATCAAGAACAGTCAACAGAAGTTACCCAAGTTTAA
Protein Sequence
MGRRCCVADCPSTSRLFEHHGVTYHSFPMDAVIRAIWIKNSRISLDRQITKSVLVCSRHFRRLDFNTIKNGKYLLKPRVFPTVFPWGKMEPAEIEADHRALQQATLDGSGVSSSANSASNEDVIKATVDKIVAQILSESAERDAADRKAKAEAAAKAEAETEAKQKEAAATKEAAVDSALVASSAEGTTATSSNETTAAVTDSATEAVPAASNTGSPLSNSPPKYGLPTNIAIGARLEALSADGAWLPARIVEVNESEQTLLIRFERNNKLKVSPSTSGGNQEWIGFKSDRLRQRISSRVLPIFELEEKCMARWSGPRKFPGTIKKLLGNDTYEVLFDDGYTKNVRAVHMNKLPRQVLANIEQDADTQSTDSAPAAVAVKRPSTGATSTGKKAKVTPPRKDWPLLDMSNLDLAALGLPEIPHDGEWTCHWVNDQPIGTEGYLIVGEHQKPTVIVHDWRLPPGWIKHMYQRSNVLGKWDVILVSPSGKRFRSKSDLKVFLESQGLVYNPDVYDFSIHRRRAKDINAYVYTHDYSPQQPAKPKPMDMSVDTTATESQDQSTSKLLTATPTSTPMSPMATRRGAGVDNQYMETPVASLMPPAELMSPSPRAPDNEAMPHTTESADATSVLALDEGTVLEDGYVYIGGLKVQITDNLFVCPSEGCGKTCRKEHILQIHIRHYHKELAQHFSHCPKMQELAVKRTHPSSIEQNEQTPKNQIPNQQFFNKLHQQDLQQSRSFRRQTAVTDTSPTVRDNSPTVSPSSRLLSPKVETPTTSKVSPQATSATPEAATSTAAPAPVVAPPPVEVSPIPAAQEPNKSSTPVVVNRATKRVRATSNKRSSGSRKSSRQRTQRRYANVSNEDLPASTNAHNSPASGADCEDTRQSISTPTPTPDVRNDAKKRRVALSGTPASSPIIDSASTPSSNDVVDINAALAPPPPQQASQTPQYIKENGELIRIVRMRQEEIINCICEYGEEDGLMIQCELCLCWQHGACNGIVKESDVPDKYVCYICRNPPRVRDSMRFKHDQDWLFEGKLPVAGYHTPNPQAPKKFELLKRSHTLTGNLLDAKRSMHSLSVKINIARNRYHPKLYLWAKKWDEDQAENATTPVKRPKAEQSDWPHVPQPEAAIDPEECQYRLIEHVKIQQSLLMNRLNEIEGEIDELEKEDTMTDLKDANMSTTKEAMATFIKELETLKRLANLNKVANMKQALKNQEQSTEVTQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00519916;
90% Identity
iTF_00540405;
80% Identity
iTF_00554419;