Dmon010716.1
Basic Information
- Insect
- Drosophila montana
- Gene Symbol
- -
- Assembly
- GCA_003086615.1
- Location
- LUVX01042906.1:102065-105168[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.5e-05 0.0056 17.1 5.0 1 23 171 194 171 194 0.97 2 14 0.00025 0.021 15.3 1.1 1 23 243 266 243 266 0.96 3 14 0.00064 0.055 14.0 2.8 1 23 332 355 332 355 0.94 4 14 0.0062 0.54 10.9 0.4 2 23 407 428 406 428 0.96 5 14 0.015 1.3 9.7 0.6 1 23 544 566 544 566 0.94 6 14 0.00022 0.019 15.5 2.1 1 23 573 595 573 596 0.95 7 14 0.00034 0.03 14.8 1.4 2 23 604 625 603 625 0.96 8 14 0.0094 0.81 10.3 0.1 3 22 653 672 651 675 0.88 9 14 6.3 5.4e+02 1.4 0.1 9 22 715 728 713 728 0.83 10 14 0.0087 0.75 10.4 1.5 1 23 737 760 737 760 0.96 11 14 1.2e-05 0.0011 19.4 0.5 1 23 779 802 779 802 0.97 12 14 0.029 2.5 8.8 0.2 1 23 812 834 812 834 0.94 13 14 1.9e-05 0.0016 18.8 3.3 1 23 840 862 840 862 0.99 14 14 3.9e-05 0.0034 17.8 0.9 1 23 868 890 868 890 0.98
Sequence Information
- Coding Sequence
- ATGACAAGAACGTGCAGGATCTGCGGAGGCGGAGATGGACGCTATTGGATCGAGACGCCATTGAACAATTACGCAGATAAAACATACACccaactgctgctggagctAACTAAACTTGAGGTCGCCTTGGATCAAGCTGACAAGCTGCCGCCCTGGATTTGTCGCAAGTGTGCTCACAGCTTAGAGAATGCCTACGATTTTGTGGTGCAAGCGCGTGAAACTCATGAGGTTTGGCTTCAAAAGATGTCAAGAGAATCTCCTTCGGAGGATACCGAAATAGGCACTTTGGAGTGTTTGCGAGAGACACCTATACAATTGCTGGATATAGAGGGCGTCACAATTAAAATGGAAGAGACCTCAGAGCCTGTCACGCCGTCAGCAGATCCAACCAATCCAATTGATCCATTGATTAAGAAAAGCATTGTGGATGATGACACcgaagatgatgatgacgacgatgatgtgCCACTCAAGCAACGCCagacagcacacacaaaattgcCAATGCTGCACAAGTGCAATAAGTGCGACAAGGCCTTTAAATATGTAACCAACCTCTTCAGGCACAAGCAGCGGGATCATAGTCCAAATCGCTGCCTGACCAAAGCGCGGGAAGAAGACGAGAAGACTCACCACTCAGAACCATTTCTACACAACCTGATAAAGAGCTCCATGACAGAACGCAGCAGCGAGGCAGActtggACAATGAGTCAGCCGATAACTATTACAAGTGTGATCAATGCGACAAATCCTACAAGTACATTATGCTGCTCATTAAGCACAAGAACCAGGCACACATTTCCAGCCAGTTGGCAGCGAAGCCTAAGTCAACTGTAATTAGCAATTCCAGTACAGAAAAAACGCTTAAGACGAAAGGATCACAGCAAAAGCACTCGAAGCCGTCTAGCACAGATTCTCTTGTGCATAGTATCATTAAAGAGATCAACATACCCGATGAAGATGATACCGACAACTCCAGTGTAGACAATTACTACAAATGCGATCAATGCGACAAATCCTATAAATACATTGTCAGTCTCAtcaagcacaaacacaacgAGCACAAGGCGTACAAGGATTCCGATGAAGACGAGGACGAAGCGGCTTCCTCCAGATATGCAGCAGACACACCTGCCATGTCGAAGCCCTCCCGCATCGACCGACGCGTCAAAGGGTTTGATTTGCTTCGCTGCAAGCCGAATGGCTCAAAAGAGATTCAATGCATGATCTGTCTGCGCAGATTTATCAAACTTCGCGAGCTGCGCGAGCATTTAAAGGCGCATCCCAAAGACTTTACATTCGAAGCCCATGACGAGCCCATTGAGCGTATTGCAGAGGGCTTCTACAAAACAGCCGTAGAGTCCACAGTGGCTGGCTTAAAGCGGCGCATTTTCAATGATCTGAAGGTGGGCATGTATGGCCGCTACTACTCCATAACGAATGAGGCTCGCTACGAGATGAATCTGGATAGCTCGGACACAGATAGCGATGGAGAGGCGGATGTTGTCGAGCGCCACAGTTATGCTTGTGAGCTGTGTGAATCGCCCGCCGCTGTGTGGCCTCGCAAATATCAATTGCACGAGCATCATAGACAAGAGCACANNGCATGCGTTAATACGCTGAAGCGCTTCATGTGCGATAAGTGTCCGCAGCGCTTCTTCTGGCGGCGCAACTTACGAGCGCATCTTGTGGAGCACAAAAACAAGCAAGACACCTATCCCTGTGATCAATGCTCGCGCAGCTTTCAGGATAAGAGCGCTGTGACCAAGCACAAACTAATGCATCACGATGTCAGCAACGAGCTTTTACCCTGCCGCTGGTGCACACGCACCTTCTATCGCCCTGCGCTATTGCACAAGCATGTGCAGCGTCACGGCTTTAGCGGCGAGGATCTGCCCTTGGCAGAGACTCTGCTAGCGGATGCCGCCAAGACCCCCGGACCCAAGACGATCATTTGTAAGCTATGCGACATGCAGTTTGTTAGCATTGCCGATCTGCGACGGCACTTCTCAATGCAAGCGCACAGTGAACAGGCCTCAAACTATATGATAAGCACCGAGGAAGGCTTTGAGTTGCTGTTAGATGAGACGGACGAAAGCGACGATGATTCCGCGGGCTCTGCGAGCATCATAAATAATCGAANNACCGTTGACAAGTCCATGTTGGAGCAGCACTTGCGCATGCAGTGCCTCAACCAGGAGAAAAAATTCAAGTGCTCACGCTGCGGCTACAAATTCATGTGGCGCGAAAATCTGGATCAGCATATGACCAGTCAACACCCCAAATCATCCAATCAGGCACCCGTTACGATTAAGCGAAGTAGGCGTTTCCGATATCAATGTCCACACTGCTGGCGCTCCTTTGTAGTGCAGCCAAGCCTGGATAAGCACATACGCGACATGCATGTCGCTAAAAAGAATCCAGGAAAGAAGTATCTCTGCTCACTATGCGGCCTGGAATCTCTGACGCCCAACAAGCTTAACATTCACATGCGGCGTCATAACGGCGAGAAGCCATTTAAATGCGATCTCTGCGACATGTCCTTTACAGTGCATTACGAGCTAAAGGTGCATCGCCGCAAACATACGGGTGAGCGACCCTATCAGTGCACGTTCTGTGCCAAGGATTTTGCCCGACCCGATAAGCTTAGACGACATGTTTACATGCATAGCGTTAAgcattaa
- Protein Sequence
- MTRTCRICGGGDGRYWIETPLNNYADKTYTQLLLELTKLEVALDQADKLPPWICRKCAHSLENAYDFVVQARETHEVWLQKMSRESPSEDTEIGTLECLRETPIQLLDIEGVTIKMEETSEPVTPSADPTNPIDPLIKKSIVDDDTEDDDDDDDVPLKQRQTAHTKLPMLHKCNKCDKAFKYVTNLFRHKQRDHSPNRCLTKAREEDEKTHHSEPFLHNLIKSSMTERSSEADLDNESADNYYKCDQCDKSYKYIMLLIKHKNQAHISSQLAAKPKSTVISNSSTEKTLKTKGSQQKHSKPSSTDSLVHSIIKEINIPDEDDTDNSSVDNYYKCDQCDKSYKYIVSLIKHKHNEHKAYKDSDEDEDEAASSRYAADTPAMSKPSRIDRRVKGFDLLRCKPNGSKEIQCMICLRRFIKLRELREHLKAHPKDFTFEAHDEPIERIAEGFYKTAVESTVAGLKRRIFNDLKVGMYGRYYSITNEARYEMNLDSSDTDSDGEADVVERHSYACELCESPAAVWPRKYQLHEHHRQEHXACVNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQDTYPCDQCSRSFQDKSAVTKHKLMHHDVSNELLPCRWCTRTFYRPALLHKHVQRHGFSGEDLPLAETLLADAAKTPGPKTIICKLCDMQFVSIADLRRHFSMQAHSEQASNYMISTEEGFELLLDETDESDDDSAGSASIINNRXTVDKSMLEQHLRMQCLNQEKKFKCSRCGYKFMWRENLDQHMTSQHPKSSNQAPVTIKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00567692;
- 90% Identity
- iTF_00531109; iTF_00534730; iTF_00490930; iTF_00506267; iTF_00526749; iTF_00617053;
- 80% Identity
- -