Dmel009232.1
Basic Information
- Insect
- Drosophila melanosoma
- Gene Symbol
- -
- Assembly
- GCA_035042045.1
- Location
- JAWNLY010000176.1:7401120-7405218[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-14 1.2e-10 40.7 0.0 8 73 289 350 283 353 0.87 2 2 8.1 1.1e+04 -4.0 0.0 9 24 458 473 455 475 0.80
Sequence Information
- Coding Sequence
- ATGGAGGAAGGCGCCGATTTATACGAAACTTACTCGAATGACAGTCGCAAAAAGCTGAAGATCGAAAAGAGTCGACGCAGCGAATTGGAGATTGAAGCTCTAGTGGGTTGGAGCGGCCATTTTCCTTTCTCAACCATCCATAACCTAGAAAGCAACTTAGCCATGGAACAGcagctgcccacTGATCTAATGGACATTGCTGCCAATGGGCTAAGAATTTATTCCAGAGAGCAAGAGGAAGAGGACCAATCGCAGTTGCATCCAGCACCACAGACGCCGCTGGCGTCAACACCTATGTCTGATTCTGATGCCTTCTCATCCGTTTCAACAATGAATTCACCGctaacaacagcatcagcagtagcatcagcctcaacagcatcagcagtagcaTCAGCTCCATCAAATACATCAGATAACAGCACACATACCACAATATCGACTCCTGCATGTTTTCAGACAGCTACGCAGACAAACAACACCACCTGCGATATCACCGATATCACCAATAACGGCAGCGGTTTAAACTCAATGCCAACTGCAACATCTTCTCCTCCACAACCTGAGTTAAACACAGAAGCAGAATCACCAACAGATATAGACAAGCAGaaGTTTAAAAAACAGGACAACGCCAAACCGGACGAGGTAAGCTTCAACACGTTGAACAACCGCTCTCGCATGCGCTACTTATCCCATAGTGCGTCGACAAAGGAACCAACTGATGACAAGGATCAGCCACTTTGCATGCGGCAGATGCGCTCCAAACCGATGTATCAATTTGACCCCCCTACCACTAATGCAAAGACGCCCAAACGACGGCGCTCGGTTGCTGCGAACAAATTGCTAGTCACAGATCCCTTTTATTGCTTGCCCTTCGACTACGGCTGGAAGCGTGAATTAGTGTTGCGCAGCAATTTGAACAATGCACGCCAACAGGCCGACGTTATATTCATATCGCCAGCGGGCAAGAAGCTGCGCTCGAGAGCTGACATTATCCCACTGCTTGTGCCCGATCTGACAATTGATCATTTCTGCTTTAAGCCCCAGCTTCAGAATGCTGGCGAGCAATACGAAACGGTTCGCCAGGCTCAGTCTGTTATGGAACGTCGCAAATTGATAGCCGCCACAAAGCAGCACAAACAGCAAgggcaagtgcaacagcatcagcagcagcagaagcaaaaagagccgcagcagcagccgaagcaaaaagagccgcagcagcagcagaagcaacaagagcaacaagagcagcagccacaacaacagcagcagttggctaACAGTATCGATCCAGGTCAACAAGCATCATCAACGCTAACACCCGTATTCGGGAAACGTGTGCCTAAGCCTAAGGTGCCCAAGGGCGCCAGTCCGCCGCCTGAGGGTTGGACACCAACGATGGCGGTCAAGAGAAATGCTCGCGTCCTGGCTGCGAGCAATGGTAACAGCAAtggcggcagcaacagtgcTCGCAGACGGGGCAGCAACCAGACGAACAAATCTACAAAGGCAGCACCAGAGACGACGTCGGTTGTGCCGTCCCTTTTGCCGCCAGCAGATATAGcacgacagcagcaggcacGTGGACTTGGACTGACCAATGATAATGTtagtgccaatgccaatgtcaATGGCAATGGGATCAATAAGCCGGATAAGAAAGTAATCGATGAGAACGTGCACGCCGCCGGCGATGGAGTCATCGTCAAAGAGATTGAACTTCCGAGCGCTCTGCCCCCTGCTAAGCTGCTCAGAGATGATTCTTCTGCAGGTCGTGGCGGTCCACCGCCGCGTACGCGTCCCAAACTACCACACTATCTTGGCGATCCAGAGTTGGGTATCAATACGGGATATTTATCTAGGCGCAACGCCGCAGCTAATCGTCTGCAAGTCGTTGATTGTATTTCTGGTGGCATCATGGGCTGCCAGGTGATGACGGCCGTTATGAAGACGCTTGACCTGCACGATCGCGTGCGCTTGTCAAGAGTGTGCAAGACCTGGGCTATGATAGCCCGCGATAGGAGCGTTTGGCGTACGGTGAAGTTGCGCGATACGCACATTACCAACTTTAAACTTCTGCTGCGTGATATGGCGGTTTATGGCACCGCCGAGCTCGATATGATGGGCGTGAGAATCGACAATCCGAAAATGCGCTTGGACGGTGATTTGCGAGTATTGAATATGTTGCGGATTATCCGCACCGATGCGAGCGAGGCGGAGTTCATCGAGACAATTATAAAGCGCCTTCCAAGACTTCAGGAGCTGCGTACAACGTGCACCAGTCGTACTCTGAATCTGGCCAACATCGGAAAGGTGCtggatttgtgtgtgctgcgcATTCGCATGCTGGAACCAAAGGCTAGCATCATTTCATTGCCGCCGCTACAAAATCTGAGCTGCTTGCGAGAGCTGAGCTTGCGCGGCATTAGTAACATGGCTCAGCTGgagctgttgcagctggagggattgcagcagctggagaCGCTCGTGCTGGGCTCGTGTCGCGGCATGAAGGTGGCAACGTTCGGGCATCAGGTGCTTCCCAGTCTGAAGCGTTTGCGCCACTTGCGCCTGGAGAACCACCACAGCAATAGCTCATTTAATATACATGAAATCATGGCTGGCATTGCCGCTGCTGGCAGTGTGAAGCGTGTCGAACTTATAAATGTCAAGGTCGATGAGGAGTTGAGTCGTCAGTTGTCCGAGTGTAAATCTATGCAggatctgctgctgttgccaaacTTCCACAATCATAACGCCTATATGATGCACTACATAATGCAGGCCATCAACGAGAACAGCGAACAGCTCAAGGTGTTTTGCTTGGAGATCACCTACGAACTGCTCCTTCAAACACCTGAAACAGGACGAATCCTGtgtcaaaagttttgtgttgaGTTGGGTCATCAACTGGCCAAAGCACAATAA
- Protein Sequence
- MEEGADLYETYSNDSRKKLKIEKSRRSELEIEALVGWSGHFPFSTIHNLESNLAMEQQLPTDLMDIAANGLRIYSREQEEEDQSQLHPAPQTPLASTPMSDSDAFSSVSTMNSPLTTASAVASASTASAVASAPSNTSDNSTHTTISTPACFQTATQTNNTTCDITDITNNGSGLNSMPTATSSPPQPELNTEAESPTDIDKQKFKKQDNAKPDEVSFNTLNNRSRMRYLSHSASTKEPTDDKDQPLCMRQMRSKPMYQFDPPTTNAKTPKRRRSVAANKLLVTDPFYCLPFDYGWKRELVLRSNLNNARQQADVIFISPAGKKLRSRADIIPLLVPDLTIDHFCFKPQLQNAGEQYETVRQAQSVMERRKLIAATKQHKQQGQVQQHQQQQKQKEPQQQPKQKEPQQQQKQQEQQEQQPQQQQQLANSIDPGQQASSTLTPVFGKRVPKPKVPKGASPPPEGWTPTMAVKRNARVLAASNGNSNGGSNSARRRGSNQTNKSTKAAPETTSVVPSLLPPADIARQQQARGLGLTNDNVSANANVNGNGINKPDKKVIDENVHAAGDGVIVKEIELPSALPPAKLLRDDSSAGRGGPPPRTRPKLPHYLGDPELGINTGYLSRRNAAANRLQVVDCISGGIMGCQVMTAVMKTLDLHDRVRLSRVCKTWAMIARDRSVWRTVKLRDTHITNFKLLLRDMAVYGTAELDMMGVRIDNPKMRLDGDLRVLNMLRIIRTDASEAEFIETIIKRLPRLQELRTTCTSRTLNLANIGKVLDLCVLRIRMLEPKASIISLPPLQNLSCLRELSLRGISNMAQLELLQLEGLQQLETLVLGSCRGMKVATFGHQVLPSLKRLRHLRLENHHSNSSFNIHEIMAGIAAAGSVKRVELINVKVDEELSRQLSECKSMQDLLLLPNFHNHNAYMMHYIMQAINENSEQLKVFCLEITYELLLQTPETGRILCQKFCVELGHQLAKAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00498870;
- 90% Identity
- iTF_00543741;
- 80% Identity
- -