Dmel008127.1
Basic Information
- Insect
- Drosophila melanosoma
- Gene Symbol
- retn
- Assembly
- GCA_035042045.1
- Location
- JAWNLY010000170.1:240678-271724[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-26 9.3e-23 80.3 0.0 2 89 336 421 335 421 0.96 2 2 6.5 9.2e+03 -3.0 0.8 21 38 589 611 556 626 0.51
Sequence Information
- Coding Sequence
- ATGAGCGATGCTTTCGAGTTCATtcagacgacgacgacgatggtcGATGTTGATCTGGTCAATcaatttggctttggctttgacttcAGGGCCCAGAGCCCCATCCGAATGCTTAACAAGGCTGAGTTCGAGTCGGAATCGAAGACGGAGATATTGTCGCACGGTGATCGTACGGATGACGAGATGCGCGACTGTGATTCCGTTGACGGGGAACATCATCAGATGAGCGCCAAGGCGGCAATTGCAGCCCGGCTCAGTCACACAGTTGCCGGCGGCGCTGGCCTCAACTTTGCCAGTCCAGAGCAGCAAACAGATCTGCCACTCAGccatcatcatcagctgccGCCGAATCATCCGCTTAACGCTTTGGGCAGCTTTATGAGCATCGGCGGCCTACACAGCATTCCAAATCTGCAGCACAGCGATGTCCTCGAGAAGCTCAAGATGCAAGTGCGCGACATGAAAGTTGGCCTCATGGAGCAGGACTATGCAGCGGCAGCACATGCCGCAGCCTTTGGCGCCAACATGCTGCCCACAACGATCAGTGCGGCCTTTCCGTTGCCGCACAATTCGGTGGCAgcggctgcggcagctgcaTCCTTTGGTCATGCCACAAATGTGAATGCCAATCCGGTGCCGCCAGCCAGTAATGGCGCCAGCTACAATGGTGTGGCCAGTGTTGGAcatggagcaggagcagctgttGGCGTTGGCAATAGTGCTGGAACAGGTGCAGGAGGTGCTGGAGGCAACAACACTGgtgttaacaacaacaacaacaacaatagcaacagcaacaacaacaacaacaataatgccGGCAATGGTCATCCCTTTTCATTTGCATCGCCAACAGCGCCAAGCAGCACCAAAGAAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGATGATCCCAAGCGAAAGGAGTTTCTCGATGATTTGTTTTCCTTTATGCAAAAGCGAGGCACGCCCATCAACCGACTGCCCATTATGGCCAAATCGGTGCTGGATCTATATGAGCTATATAATTTGGTGATAGCACGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCCGCATTCACCCTACGCACCCAATACATGAAGTATTTGTATCCCTACGAGTGCGAGAAGAAGAACCTCAGCACTCCCGCCGAACTCCAGGCGGCCATCGATGGCAATCGTCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAGTCAGATGCCACTGacaACAATTTCGCGACCACCGTTACCTGGTGGCATGCAACAGATGTCGCCGTTGGCGCTGGTCACACACGCCGCCGCGGCAAACAATCAGCAGGCGCAGGCAgcggccgcagcagcagcagcacatagACGGCTGATGGGCGCACCGGGCTTTGGTCAGATGCCGAATCTGGTGACGCAGGAGATTGAGAATCGCATGATGGAATATCTGCAGCTAATACAGGCcaagaaggagcagcagcagcaacaaatagcGCCAGTTCTAGGCGCTACACATccccaccagcagcagcaacaacagcagcaacaatcgatGCATcatcaccaacaacagcagcaacaacaacaacagcagcagcaacagcagcagcagcgacagcgctCACAAAGTCCCGAGCTGAGCACGCGCGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCCTTGAACCTTTCCGATTCGCCGCcaactttgaatttgaatcACATAAAACGGGAAAGGGAACGCGATCCGACGCCAGAACCAACGGATCTGGAGGAAACGGCACATCAGCCGCCGCCAGCGAAACGTGTAGGCAGCGGCCTAATGCCGCCAGGTTTTCCCGCCAACTTTTACTTGAATCCCCACAATATGGCCGCTGTGGCAGCCGCAGCTGGTTTTCATCACCAGGCCGCcaacaatcatcatcatcatcagcagcagcagcaacagtcgcagcagcaggacGCTACGTCAGAGGGTGAACCAGAGGATGAGTATGGCAATGGGGAGCACAACACCACCGGCAACTCATCGTCGCTGCACGATGACAGTGAGCCACAGCAGTTGAATGGACATCACCtacaccatcatcatcatgaccATCACGATCTGCTTCATGACCATCATCAtgagcatcatcatcatcatcagaatCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCACAtcgacaacaaccacaacaacatcatcatccaTATCCAAAGCGCATCGCCACAGCTCGCCGGTGTCCACAAAAAAgaagggcaacaacaacaacagcagcagcctcaacaacaacaacaacaacaacaacaaatcacagTCCTTGTTGTGCACAAAGGATGCAGGCAATGACAGCAACAGTGCCAGCGATGTCAAGCTGAATCCCCTCGAGACGCTCAGCCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAACGgcacaaatgcaaatggcgaACAGCAGCTGATTGTCAATCTCGAGCTAAATGGCATTAAGTACTCGGGTGTGCTGGTGGCAGCCATccaagcagcggcagcagcagcggcagttacagcagcagcagcggtcaAGCCAGAGGCGGCACAAGCTGAGCGGGAGCAGGCAGCGAcgccagctgctgcagctgctgttgctgctgaggaGCCAGCAGTGAGACGCAACAGCCTCGCTGAGGATGAGCTGAAGCATGAAAACAGCCAGAAACTTGGCCAGAACGAGGCAATTGATGAGGAAACAATGCAggaacatcaacaacagcagcagcaacaacagcaacaacaacaactcacaGATGACATTGTGAATGGATCGAGTGTTGGAATTGGAGGAGTTGGTGTTGGGGTCAGTGGTGGAGTGGGTGCAAGTCTGCTTAAGGATGCTGTGGTCAGTTCATAG
- Protein Sequence
- MSDAFEFIQTTTTMVDVDLVNQFGFGFDFRAQSPIRMLNKAEFESESKTEILSHGDRTDDEMRDCDSVDGEHHQMSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMSIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISAAFPLPHNSVAAAAAAASFGHATNVNANPVPPASNGASYNGVASVGHGAGAAVGVGNSAGTGAGGAGGNNTGVNNNNNNNSNSNNNNNNNAGNGHPFSFASPTAPSSTKEANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHSQMPLTTISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGAPGFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQIAPVLGATHPHQQQQQQQQQSMHHHQQQQQQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEETAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHHQQQQQQSQQQDATSEGEPEDEYGNGEHNTTGNSSSLHDDSEPQQLNGHHLHHHHHDHHDLLHDHHHEHHHHHQNHLDKSDDSAIENSPSTSTTTTTTSSSISKAHRHSSPVSTKKKGNNNNSSSLNNNNNNNNKSQSLLCTKDAGNDSNSASDVKLNPLETLSLLSGMQFQVARNGTNANGEQQLIVNLELNGIKYSGVLVAAIQAAAAAAAVTAAAAVKPEAAQAEREQAATPAAAAAVAAEEPAVRRNSLAEDELKHENSQKLGQNEAIDEETMQEHQQQQQQQQQQQQLTDDIVNGSSVGIGGVGVGVSGGVGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00511055;
- 90% Identity
- iTF_00573828;
- 80% Identity
- -