Dmel017540.1
Basic Information
- Insect
- Drosophila melanogaster
- Gene Symbol
- MBD2
- Assembly
- GCA_000001215.4
- Location
- JANZWZ010000930.1:120223-121793[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-15 5.7e-12 45.4 0.0 1 41 9 69 9 82 0.95 2 2 0.0024 13 5.8 0.0 42 76 172 217 171 218 0.92
Sequence Information
- Coding Sequence
- ATGCAAATGAACCCGAGCGTCACAATCGAGCGCAAACGCGTCGACTgcagtgtcctgccaaagggatggcagcgcgacgaggtccgaaagtccggcagcagcgccaataacaacgccagcagcaacaacaacagcagtgccacagccagcagcaacaacaacaataacaaggtggatgttttctactacagCAGTCCCACAGGAAAAGGGCGGAGGGAAAGCCGCAGGACATTGCAATCCCTGATTTCCAGCCTGGCAAAATGCCGCACTGCGCCCTGCCCTCGCCCTCCATTTCGCTGGGGCGGTAATGGGGCCACCAGCGGATCGGCGGCCAATGCCCTCAAGCGCAAGTTCGCCCGGAGTCAAGGAGGCAATgctgcaggagcagcaggagctgctcctccggcagcgaccgcctcgtcagcagcaacagcgacagcagcatctgcttcaccatcaacggccaatcgccagcagcaacagATCGAACTCAGCCGAGCCCTGCGCACTGATACTGCCTCGATCTTCAAGCAACCGGTGACGGTGATTCGCAACCATAAACAGGATCCCGCCAAAGCGAAGAATGAACCCAAGCATGGCACTCGGGAGAAGCCGAAACAGCTGTTCTGGGAGAAGCGACTGGAACGACTACGCGCCTGCCACGACAGTGGCGAGGAGCTAGACGACATCTCACTGCCCAAGACCATACGCACCGTTGGCCCCAATGTCAACGAACAGACCGTCCTCCAGTCGGTGGCCACGGCCCTGCATATGCTCAACGCCGGCGTACACGGCCAGAGTTCTACGAAGGCTGATTTGACCAAGAATGCCATGGCGTTTATGAATCCTGAACAACCGCTCATGCACGCGGTGATCATTTCGGAGGACGACATACGCAAACAGGAGGATCGGGTCGGAGTTGCGCGGCGAAAGCTGCAGGATGCACTCAAGACATGA
- Protein Sequence
- MQMNPSVTIERKRVDCSVLPKGWQRDEVRKSGSSANNNASSNNNSSATASSNNNNNKVDVFYYSSPTGKGRRESRRTLQSLISSLAKCRTAPCPRPPFRWGGNGATSGSAANALKRKFARSQGGNAAGAAGAAPPAATASSAATATAASASPSTANRQQQQIELSRALRTDTASIFKQPVTVIRNHKQDPAKAKNEPKHGTREKPKQLFWEKRLERLRACHDSGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKADLTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00592385;
- 90% Identity
- -
- 80% Identity
- -