Dmay004359.1
Basic Information
- Insect
- Drosophila mayri
- Gene Symbol
- -
- Assembly
- GCA_008042485.1
- Location
- VNJN01005011.1:130132-133013[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8 3.4e+02 1.9 0.9 2 23 148 170 147 170 0.92 2 13 0.0019 0.13 12.6 5.0 1 23 188 211 188 211 0.97 3 13 2.4e-06 0.00017 21.7 5.6 2 23 218 240 217 240 0.96 4 13 0.0096 0.67 10.4 9.1 2 23 475 496 475 496 0.97 5 13 1.7e-06 0.00012 22.2 2.9 1 23 502 525 502 525 0.95 6 13 0.0003 0.021 15.1 0.4 1 23 530 553 530 553 0.93 7 13 5.5e-05 0.0038 17.4 5.5 1 23 571 593 571 593 0.96 8 13 0.00022 0.015 15.5 0.6 1 23 598 620 598 620 0.98 9 13 2.9e-05 0.002 18.3 1.7 1 23 626 648 626 648 0.95 10 13 2.1e-05 0.0014 18.8 0.7 1 23 654 676 654 676 0.98 11 13 3e-07 2.1e-05 24.6 2.7 3 23 684 704 683 704 0.99 12 13 2.2e-08 1.5e-06 28.1 1.1 1 23 710 732 710 732 0.99 13 13 0.33 23 5.5 3.4 1 19 737 755 737 760 0.89
Sequence Information
- Coding Sequence
- ATGCACCCATCAAGAGCAATTGCCATGGCGTCGCCCTACCCGCACCCGCAGCCTGATCCGGGTCTCAAGTCCGAGACACAGGCGGGAGGTGGTATGTTGGTCCCCCTGGATTCCGTTGACGCGGACCGCCTCTGCCGCGTTTGCCTTAAGGACGCTTCAGAGAACGGAGAGCTGCACTTCATCTTCGCGGAGGGGCCATTGGAGCTGGGCGCCAACTTGGCGCGCATCCTGGACGAGTGTACGCTGCATCCGTGCGAGCGACACGACGGTATGCCGCCAAACATGTGCGGCTCCTGCGTAGAGGCTGCCCGCCACGCCTACCGCTTTAAGCGCAATGCCGAGCGGTCCTACTGCTCCCTGGTGGCACTGCTCGGCCGCTCCCCGCAGTTGAAGTCAAATGGCGCCGAGGCAGGCACCCAGACCGACCAGGTGGCCCTGCTGCCCTGCGAGATGTGCCACGACCAATTTCTTAACAGCCTGGAGCTGCGCCTGCACCGCAACCGGGTGCACAGGACGACGAAGGAGCAGGGCACTGAAGGCAACGACGGACCCGTCGAGGAATTCAAGTGCAAGTTTTGTCCCCAGCACTTCCCGCATCTTCGTCAGCTGCGCAGCCACTTGGCGCGCAGCCACGAGCAGACCGCTCGCCTCCAGTGCGGGCATTGCCAGCGCACCTTCAGTCGCCGGGATCATTTGTTGCGACACATGCGCAACCAGCACAGACATCTGGAAGCCGACCTCTTCCAAACTTGGCCGCCGGCGGACGAGACGACCATGCAAAGCTCCGCGGGCGATGAGCTCGTCTCTGCGGAAGTTCTCCTCAACGAGAAGGAAGACGACCACGACGAGGGCGACATCTTCCAATGCAACACGAATCCCATTTCCAGcaacgaggacgaggacgacgatGAGGATAACGTAGAGGCTAAGCAAACACTATGGCTGCACATCAAGCCGGAGCCCTGTCTGGAGGCTGAGGAAGTTAACCTGGCCACGCAGCTAAAGCTCGAGAAGACGCGGCGGCGGGAGAAGGCAGAGCCGCGTGTTGCGAGCTCCAGTGAATCGCCGGTGAAACGTGAACCCATAGCTGTTGTGGACTCTCAACTCAGCATCAAGCAGGAAAGCCAGCTGGTGGGAAGCGAGGACGAGGCTCCTATGGGTGTGGAGGAGTTTATGGCGTTGCACAACACGAGAGAACTGCCGTTCAGCGATGAGGACAATTTCGGGGACTATGGCGATGACGAAAGTGCCCTggaagacgacgacgacgaggacgaggatgacGATGAGGATGGAGACGGGGCCGGGGACGATGGAGACTTCAAGCTGAAGATGGAGCCGCTGGACGGTGACCAGCCGCCAAAGAAGTCCAAGTCTGGCAGGCGACGACGCAGAAATAAGGGCGAACCCAATCCAGAGAACCGGTGCGATGTATGCCAGCGCACCTTCTCGCGCCACTGCCACCTGCTGCGCCACAAGCTATCCCACCTTGAAAAGAAGCCCCACAATTGCCCGCACTGTCCCAAGGCGTTTGCGCGCAGCGATCACCTCAAGGCGCATGTCCAGAGCCTGCATAGCAATAAGGAGCACAAGTGCGGCATTTGCGAGGCGGCCTTCTCTCGCCTGGACGCTCTGGAGCGGCACAAGGTTAGCAAGCACAACGGTGAGGGCCTTGAGCCAGGCAGTGAGCTCAAGCTGCAGCTGGCCGAGCACACCTGCGAGTACTGCTCGAAGCGTTTCTCCAGCAAAACGTACTTGCGGAAGCATACGCTGCTGCACACCGATTTCCTCTACGCCTGCAAGAGCTGCGAGGAGACATTCCGCGAGCGTGCCCAGCTGCGGGAGCACGAAAAGACGCACACGGGGCAGCGCAACTTCCTCTGTTGCATCTGCGGCGACAGCTTTGCCCGCAACGACTACCTCCGCGTCCATATGCGGCGCCACAACGGCGAGAAGCCCTACAAATGCCGCTACTGTGTCAAGGCCTTTCCGCGGGCCACCGATCTCAAGGTCCACGAGCGGTACCACACAAACACGAAACCGAATCTGTGCAATACCTGCGGCAAGAGCTTTCACCGGGCCTACAACCTGACCATTCACATGCGCACTCACACCGGCGAGCGACCGTACAAATGCGATCAGTGTCCCAAGAGCTTTACGCAGAGCAACGACCTGAAGGCGCACATCCGCCGGCACACGGGAGAGCGGTACAAGTGTCCGCATTGTGACGCCTACTTTCTGCAGCTATACAACATGCGCAACCACTGCCTCAGCGCCCACAATAAGCACATTGAGACGAAGACGGGACGCCTGCAGCGAACGGGTCTGCTAGACGATGGCGGTCAGTCGCATCTCACCACGGTTGTGATGCCGCCGTCACAGCTGGCAACGGCTACTGCCGCTGGTACCGAGAGCACATCCTCGTCCACGGTCATCCACTCACCGGAAGCTTACAGCAGCAATGCCACATCCGCCGGTCTGGCTCCGACAGCAGTAGCagtagcaggagcaggagcggcGTCCGCTACACTCGATGGCGCCAGTTTTGCACCAACGCCGGTCAATACGGCGGCAGCATCCTTTGGGGCTTTTAACTTTCCGCCCGCAGTAATGGCGCATCTCATGTACAATCACGGCGGCAGTAGCCAGCACAGCCAGAGTGGCAGCGACACGGGCAAATAG
- Protein Sequence
- MHPSRAIAMASPYPHPQPDPGLKSETQAGGGMLVPLDSVDADRLCRVCLKDASENGELHFIFAEGPLELGANLARILDECTLHPCERHDGMPPNMCGSCVEAARHAYRFKRNAERSYCSLVALLGRSPQLKSNGAEAGTQTDQVALLPCEMCHDQFLNSLELRLHRNRVHRTTKEQGTEGNDGPVEEFKCKFCPQHFPHLRQLRSHLARSHEQTARLQCGHCQRTFSRRDHLLRHMRNQHRHLEADLFQTWPPADETTMQSSAGDELVSAEVLLNEKEDDHDEGDIFQCNTNPISSNEDEDDDEDNVEAKQTLWLHIKPEPCLEAEEVNLATQLKLEKTRRREKAEPRVASSSESPVKREPIAVVDSQLSIKQESQLVGSEDEAPMGVEEFMALHNTRELPFSDEDNFGDYGDDESALEDDDDEDEDDDEDGDGAGDDGDFKLKMEPLDGDQPPKKSKSGRRRRRNKGEPNPENRCDVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSNKEHKCGICEAAFSRLDALERHKVSKHNGEGLEPGSELKLQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCEETFRERAQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTNTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLDDGGQSHLTTVVMPPSQLATATAAGTESTSSSTVIHSPEAYSSNATSAGLAPTAVAVAGAGAASATLDGASFAPTPVNTAAASFGAFNFPPAVMAHLMYNHGGSSQHSQSGSDTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00489505;
- 90% Identity
- iTF_00478145;
- 80% Identity
- -