Dmay011593.1
Basic Information
- Insect
- Drosophila mayri
- Gene Symbol
- -
- Assembly
- GCA_008042485.1
- Location
- VNJN01009363.1:1587023-1590100[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.4e-07 6.6e-05 23.0 3.1 1 23 204 227 204 227 0.95 2 17 3.5e-05 0.0024 18.1 0.2 1 23 235 257 235 257 0.97 3 17 0.2 14 6.3 0.1 2 23 289 310 288 310 0.94 4 17 3e-05 0.0021 18.2 3.3 1 23 401 424 401 424 0.97 5 17 0.23 16 6.0 0.6 1 19 431 449 431 452 0.93 6 17 0.063 4.4 7.8 6.4 1 23 461 483 461 483 0.95 7 17 6.4e-06 0.00045 20.4 0.4 1 23 490 513 490 513 0.97 8 17 0.00036 0.025 14.9 2.4 2 23 521 542 520 542 0.96 9 17 0.017 1.2 9.6 0.1 2 21 569 588 568 589 0.94 10 17 0.0075 0.52 10.7 2.6 1 23 638 661 638 661 0.98 11 17 0.00072 0.05 13.9 0.9 1 23 698 721 698 721 0.97 12 17 0.00012 0.0082 16.4 1.6 2 23 758 780 757 780 0.95 13 17 0.0026 0.18 12.2 0.1 1 23 794 816 794 816 0.95 14 17 1.7e-05 0.0012 19.0 1.0 1 23 822 844 822 844 0.99 15 17 3e-07 2.1e-05 24.5 2.6 1 23 850 872 850 872 0.98 16 17 3.4e-05 0.0024 18.1 3.8 1 23 878 900 878 900 0.97 17 17 2.4e-05 0.0017 18.6 0.5 1 22 906 927 906 930 0.90
Sequence Information
- Coding Sequence
- ATGAAGCTACCGGTAATGTGTCGCACCTGCGACTCCACGGACACCGACAATCTTCTTAAGCTGGCCACGCCCTCGAAAAAGTATCCGGAGAAGCTGCTCTCGGAGATTTTGATGGAGCTCACCGACATCCATGTGGATGCCAGTGGCAGCCAGAAGTTGCCACAGTGCTTGTGCAGCAGCTGCACCAAGAAACTGATGGCAAGCTATTGCTTCGTGAAGCAGGCGCTGGCCGCCAACGAAATGCTTATGAAGCACTTGAAGAACAGCTCTGCACAGACTACCAACGACTGCCTGCAGGAGGCACCGATGGAGCTGTGCGCCGAGCAGCATGTGGAGGTCAAAATGGAGACGGAGGACGAGGACTGTGGCGAGAAGGATGTTACTATCAACTGCTCAGAGCTGCCAGAACCGGGCGAACGGGATGTGGAGAGCAAAAAGTCTGTGGATCCACTGACCATGATTGAGACGGTGAAGCTGGAGGGGGAGCCGCCAAGCGTGGAGAGGCCCCCGGAAGAAGAGCCCACCTCGGACTTTGATGATGAAGACTCCCTGGACAACCTGCCCCTAAATAAACGCATTCAAAAGTGGAAAGCCAGAAGGATGTCTGTTTTCAAGTGCCACGATTGCCCAAGGAGTTTCAAGAGAAGCGAGTACCTAAAGCGTCACGAAATACGCGTCCATCAGCCGGAGACGACCCATTGGTTTGCCTGCTCCCTTTGCGTACGCAAATTCAGCCGCAGCGAAGCCCTTGAGGCGCACCTAAAGGTGCACCGAAACTCCAAGCGATCGGCAAACATAAGCGAGCACAAGAAGGCCAAGGCGGTGGATCTGAATCTCTGCAAGCCGCATGGCTACAAGCTCATCGAGTGCATGATCTGCCAAAGTCAGTACAACAAGATTGCCGATCTGCGTAGGCACTTGGAAGAGCATCCGGATATTGTCAGCCTGGGCGTTCGTCCAAATGTGGAGCCCAATGAGCTGGCGGAACTGTTTTATCCCGACTCCAAGGACATGGATGAGGAGCAGTTGATTGGCCTAATCCGCAAGGATCTGGCATCGGGAATTTATCAGCGTTTCTACTCGATAACCAACCAGAGTGGCTACGAAATGGATCTGGACAGCTCGGAGACGGACAGCGATATGGATGGCGAGCCTGAGGATCAGCAGAACAAGAGAAGACGCAAGAACCGCAAGGGTAGCTACACCTGCGAACTGTGCCAGCAGAAGTTTACGCGGAAATATCAGCTCTACGATCACCAACGGCAGAGCCACAGTTGGTCCGAGGCTCCGCATGTCTGCGGGCGGTGTGATGGACGCTTCGTTAGCCTGCAGCTGTTGCGACACCACAACGAGTCCCAATGCCGAAATGCGCAGAAGCGCTTCCTTTGCCACAAATGTCCGCTACGTTTCCGATGGAAACACAATCTAAAGACTCATTTCCGCGAGCATAGAATTACAAACCAAACCTTCGAGTGTCCCGAGTGCAAGCGTGTCTTTGACAAAAAGAAATCCCTCACCGTTCACCTGCTCAGCGTCCATGCCGAGGAATCAAAGCTGATACCCTGCCAGTGGTGTAGCCGCAAGTTCTATCGGCATGATTACCTGGTTAAGCATTTGAAGCGACATGGACTCAAGGAGCAGGACATTCCACTGGCCGAGACCTTAATAGCGGCCACTTCGCGGCCAAATGGAACAAAGAGAATCACCTGCCGGATGTGCAATTTGCACTTTGAGCGAATTGTGGATCTTCGGGCTCATATCCAACTAGAACTGAAGCTGTCATTGTCGCTCCACCAGAGCTACGACTCGCCGCACAATTATTCCATTACAAATGAGTCTGGGTTCGAGTTGCAGCTGGAGGATTCAGAGACGGAGGATGAGATGCAGTCAAGCGGCGGCGGTCGTCATGTTTACATCTGTGAGCTGTGTAGTGTGCAATGCAAGCGGAAATTCGAGATGATCCAACATCAGAGGACAATGCATCGTTTCGACAAAATGCCGCACGAATGCGATGATTGCATCTTCAAGTGTGTTTCCAAGAGCATCATGGATCACCATCGGCTGGGGCAGTGCAGCAGCAAAGAAAAGATGTACACCTGCAGCAAGTGCTCCTACAAGTTCATGTGGCCCGAGAACCTGGAGCAGCACATGCGACTGCAGCACAGTGAATCTTCCTCCGCCATCAATCCcacaggcggcggcggcggcagatCGCAGACTGGACCCGGTGACCTGGACAAGGAGGCCGGCGAAGATGGTGTACCATTATTGCAGTGTCCGCATTGCGATCGCACCTACCAGATGAAATCCCGCCTCAACAATCACATCCGAGATGTGCATGTAAACGGGGATCGCAAGCGCAAGGAGGCCATTAAGCGCTTCCTGTGCTCTCTGTGCGGCATGGAGACCCGTTCAGCGGCCGCCCTTGTAACGCACACCCGGCGTCACACCGGCGAGAAGCCCTTCAAGTGCGATCTGTGTGAGATGGCCTTTCCCAGGCATTCGGAGTTGGCCTCCCATCGACGGATGCACACCGGTGAGAAGCCATTCCACTGCACCGTTTGCGGCAAGGATTTCGCTCGGTCAGACAAGCTTAAGCGCCACATGCTAACCCACAGCGGCCTGAAGCCGCACAAGTGTACGTACTGCGAGAAGAGCTATCGCCAGGCCAAGGATCTGAAGCTTCACCTGCAGCAGCATACCGGCGAATGTCCCTTCGTTTGCGGCACCTGCGGCGAACGATTCATCCAGAGCAGCACTCTGGAGAAGCACCGTCTGATGCGACGTCACTTTGACGAAGTGGAAGCCTGGCTAAGGcgtcagaaataa
- Protein Sequence
- MKLPVMCRTCDSTDTDNLLKLATPSKKYPEKLLSEILMELTDIHVDASGSQKLPQCLCSSCTKKLMASYCFVKQALAANEMLMKHLKNSSAQTTNDCLQEAPMELCAEQHVEVKMETEDEDCGEKDVTINCSELPEPGERDVESKKSVDPLTMIETVKLEGEPPSVERPPEEEPTSDFDDEDSLDNLPLNKRIQKWKARRMSVFKCHDCPRSFKRSEYLKRHEIRVHQPETTHWFACSLCVRKFSRSEALEAHLKVHRNSKRSANISEHKKAKAVDLNLCKPHGYKLIECMICQSQYNKIADLRRHLEEHPDIVSLGVRPNVEPNELAELFYPDSKDMDEEQLIGLIRKDLASGIYQRFYSITNQSGYEMDLDSSETDSDMDGEPEDQQNKRRRKNRKGSYTCELCQQKFTRKYQLYDHQRQSHSWSEAPHVCGRCDGRFVSLQLLRHHNESQCRNAQKRFLCHKCPLRFRWKHNLKTHFREHRITNQTFECPECKRVFDKKKSLTVHLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLKEQDIPLAETLIAATSRPNGTKRITCRMCNLHFERIVDLRAHIQLELKLSLSLHQSYDSPHNYSITNESGFELQLEDSETEDEMQSSGGGRHVYICELCSVQCKRKFEMIQHQRTMHRFDKMPHECDDCIFKCVSKSIMDHHRLGQCSSKEKMYTCSKCSYKFMWPENLEQHMRLQHSESSSAINPTGGGGGRSQTGPGDLDKEAGEDGVPLLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKEAIKRFLCSLCGMETRSAAALVTHTRRHTGEKPFKCDLCEMAFPRHSELASHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFVCGTCGERFIQSSTLEKHRLMRRHFDEVEAWLRRQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00581676;
- 90% Identity
- iTF_00531787;
- 80% Identity
- -