Basic Information

Insect: Drosophila longiperda
Gene Symbol: -
Assembly: GCA_035042125.1
Location: JAWNLV010000107.1:22781048-22785032[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.67 45 4.8 5.1 2 23 332 354 331 354 0.94

2 18 4.2 2.8e+02 2.3 0.0 1 23 361 386 361 386 0.93

3 18 0.047 3.2 8.4 1.8 2 23 397 418 397 418 0.93

4 18 5.7 3.9e+02 1.8 3.0 2 17 429 444 428 455 0.75

5 18 0.03 2 9.0 0.6 3 23 488 508 486 508 0.95

6 18 0.0014 0.093 13.2 0.2 1 23 516 539 516 539 0.98

7 18 6.1e-05 0.0041 17.5 0.1 2 23 544 565 543 565 0.97

8 18 9 6.1e+02 1.2 0.0 1 19 573 591 573 593 0.76

9 18 0.00012 0.0081 16.6 0.4 1 22 613 634 613 637 0.91

10 18 0.66 44 4.8 1.8 3 21 644 662 644 663 0.93

11 18 0.024 1.6 9.3 0.7 1 23 682 707 682 707 0.96

12 18 0.012 0.79 10.3 1.4 2 23 723 745 722 745 0.93

13 18 0.012 0.81 10.3 0.5 3 23 752 773 751 773 0.93

14 18 0.0035 0.24 11.9 0.1 2 23 777 799 776 799 0.96

15 18 6.4e-05 0.0043 17.4 2.3 1 23 805 827 805 827 0.98

16 18 0.0023 0.15 12.5 1.3 1 23 831 854 831 854 0.93

17 18 0.0034 0.23 12.0 3.0 2 23 861 883 860 883 0.93

18 18 0.0057 0.38 11.3 0.1 1 23 887 915 887 915 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.67	45	4.8	5.1	2	23	332	354	331	354	0.94
2	18	4.2	2.8e+02	2.3	0.0	1	23	361	386	361	386	0.93
3	18	0.047	3.2	8.4	1.8	2	23	397	418	397	418	0.93
4	18	5.7	3.9e+02	1.8	3.0	2	17	429	444	428	455	0.75
5	18	0.03	2	9.0	0.6	3	23	488	508	486	508	0.95
6	18	0.0014	0.093	13.2	0.2	1	23	516	539	516	539	0.98
7	18	6.1e-05	0.0041	17.5	0.1	2	23	544	565	543	565	0.97
8	18	9	6.1e+02	1.2	0.0	1	19	573	591	573	593	0.76
9	18	0.00012	0.0081	16.6	0.4	1	22	613	634	613	637	0.91
10	18	0.66	44	4.8	1.8	3	21	644	662	644	663	0.93
11	18	0.024	1.6	9.3	0.7	1	23	682	707	682	707	0.96
12	18	0.012	0.79	10.3	1.4	2	23	723	745	722	745	0.93
13	18	0.012	0.81	10.3	0.5	3	23	752	773	751	773	0.93
14	18	0.0035	0.24	11.9	0.1	2	23	777	799	776	799	0.96
15	18	6.4e-05	0.0043	17.4	2.3	1	23	805	827	805	827	0.98
16	18	0.0023	0.15	12.5	1.3	1	23	831	854	831	854	0.93
17	18	0.0034	0.23	12.0	3.0	2	23	861	883	860	883	0.93
18	18	0.0057	0.38	11.3	0.1	1	23	887	915	887	915	0.87

Sequence Information

Coding Sequence: ATGtcggaaaaaataaaatctgacGAAAAAGTGCCTAGCTGCCTGCATTGCAGAGTGtacaattcaaatcaaaaatatcaTGAGATATTCGACGAAATCGGCATTGAAATAGAGCTCGCCAAACTGCTCGACAAGTATTTCGAGATAAAAGTTGAGCCTGATGcccaaaagcagaagcagttGCTCTGCGAGGAGTGCGTTAATACGCTGATTCGTTTCTTTGACATTGACGAACTTCGAAGGGAACAAGATgctgcaaatgctgcaaagAAAAATCCCGGTAATGATACAAAGTCTTCTACAAAATCCCCCAAAGACGATGAAATTCCCGCCAAAAAGCAGACAGCTGCCGTCAAAAATGGCCATGGTTCCCGAAACCAAGAAAAGCCAACGGTAGCTGCAAGTGTTACAACTGCAACGACTCATACTGCACATGATGTTATTGCAACAGGAGCGCCAGAAGCCGTCGGCAAGCGAAGTGAAACATCTAATGGCAATGCAGGCGTCAAACGGCGTCGGTCCAGAATATCTGCTCAAGGATCAGGAGATCAGGAGCAGATTAGCGCACTCATTCGTGACATTCTAGAGGATGAGGAGTCGCCAGCCGATGAGAAGTTGgtagaagcagcagccacagtcTGTCAACTGGAGAAAGAATCAGCTGtagagcaactgcagctggaTGAGGCTGTGGAGGTAGAGGAACAAGCGGTGTTCGAGGACCaggataataataatgagctGGAGTTTCTGGTTGAGCGTGAAGATAGCTCTTCGGAATTGAGCGTGCGCCACTTCAAACTGGAGCGAGTTAAAGTTAAACGCACCCTATCGCAGTCACAAAATGAGAGCCAAAGCGAAGACGAGGCATTCAAAGTGGAGCCCTTTAATTTTGTGCTAATCAAGGAATCTGATAACATTGGCGATCTATACGAGTATTTGGGAACCGTGGTGAAGACCTGTTTTGAGACTTTAACCTTTGACTGGGACACAGTGTGCCGCCACTGCTCGCTGAAGTGCAGCAAATATGAAAGTTTATTCGATCACATGCTGCAGCGTCACAAGGAGCCAGGCGAGATTTACAAGTGCCCAATTACTGAGTGTACCATAGAACTGCAGGGAGCCAAAGCCTTGGCCATGCACCTAATTGTGCTGCATGCGCCAGTAGCCGATATTCCCATTTATGGCAGCTGTCCCGAATGCAGCATGACCTTCTCAAATATATTGCAGTACAACAAACACTCCTGCGCGCATGTCATCAAAAAGCGCCGCGGCATACGCTTGTATTGTGAGATGTGCGGCTTGGAGTTCCCCTCCTGGAAGCGCTTTAATTTTCACAATCAATTTCATTTGGAGCGTCACAGGCCGCGCGCTTGTTTTGTGTGCAGCTACGCGGACACCAACTTAGATGAGCTTTTCCATCATTTGCACTACTCTCACGAGCCAGAGGGTACGCTCTTCTGTGATCTCTGCGATCGCAATTTTCGTGATCCTACAGTATTTTTGGAGCACAACAAATCACACTCAAATGTCAGCAGCACCACCTACAGCTGCACCGAATGCAGCGCCAATTTTGAGTCACGTGGTCGTCTCAATGGACATCTGCGCACCGCACATGGCAGTGTCATTAGCTGCGAAATGTGTGGACGCGAGTTTGGCACGGAGGCCACCTACAACGTGCACATGAAGACACATCTGATTATTGAGCGCGAGGTTCATGTGTGCAACAATTGCGGACTGCTTAGCGAAAATAATGATAGGATGCTGGCTCATGTAGCCGATGAGGATTCGAGTTGCTTTGGCATGGATGTGGTTGCGGAACTGATGCGTGATGCATACGTTTGTGAATATTGCTCGGCCTACTTTAAGCAGAAAAGCGATTTAAGCGCCCATCGCAATTCGGGGGTCCATAAGGATGGCCAATTTTGGTGTCATCCTTGCTCCAAGAAGTTTACCGATATGAAGCTCTACCGCCTCCACCTGCGCAACTATCAACAACTGCGCACAGATTTTTCGCATCGCCGTCTGGAAATTTGTCTCTACTATATGTGCGATAATGAGAAATGCACTGTGGCCTATATTAATTGGAATTcgctatacacacacaaacggcGCACACACGATGCCGCCGAGAAGCAAGAGCCCAAGTTAAAGGGGAACGAATGGATCTGTCAGTTCTGTCAGAAAGTATGCCGCTCCAAAATGTCGCTCTCGGTTCACGTGGCGCGCAGTCACAACAACAATAATGTGGCTTGCTCGCTGTGCAAAGCTTCGTATAAGGATGAGGAGGCGCTAAAAAAGCATCACGCCTATTGGCATGAGCGCATAGAGTGTCCGATGTGCTTGAAGGTGGTGAAAAATCGACGCAACTATGACACCCACATAAAGGTGGTGCACTCAAACAAGAAGCGCTACTCGTGCAGTGAATGCCAAAAAGGTTTCTATCACAAGAACGAAATGGAGGCGCACCAGCGGCTGCATTCGCAATCTTTTAAATGCGAACAGTGCAACTTCACCACGAGGAACAAGAAATCGCTGTCGGTTCATGTGCTGGGTCAGCATTACAAGCGTTTTGCCTTGAAGTGTAAGTTCTGTGACAAGCGCTTTGGACGTCGCCAGGGACTATCGAACCATACTCTACATGTTCATGGCTCGAAATTTACTTGTCGTGACTTTTTTGAAGGCGGTTGTGGCAAAGCATTTGCATCGATGGCACGGCTCAACGTGCATGTCCGAAAGGTGCATTACGGCAGCCTGTTTCTGACCGATGACCCAGCCAAATTAGAGGAAAAGCAGGCGGAAGAGgaagatgaggaggaggagccgGCAAGCGATGGTCCGTCCACATCGAAGAAACGTTTGATTCGCATTAGTGCAAACACTGAGATTGAATTCATTAGCAATGCAGCCGATGCCGATGACGACAATGAGAGTCTGACTGATTCCGAAATCTTCGAAGAGATTCAGGAGGTGaaagcagtagcagtagcaaaGCAGCcaccaaaaaagaaaccaaaaccaaTGACAACGAGAGCCTGA
Protein Sequence: MSEKIKSDEKVPSCLHCRVYNSNQKYHEIFDEIGIEIELAKLLDKYFEIKVEPDAQKQKQLLCEECVNTLIRFFDIDELRREQDAANAAKKNPGNDTKSSTKSPKDDEIPAKKQTAAVKNGHGSRNQEKPTVAASVTTATTHTAHDVIATGAPEAVGKRSETSNGNAGVKRRRSRISAQGSGDQEQISALIRDILEDEESPADEKLVEAAATVCQLEKESAVEQLQLDEAVEVEEQAVFEDQDNNNELEFLVEREDSSSELSVRHFKLERVKVKRTLSQSQNESQSEDEAFKVEPFNFVLIKESDNIGDLYEYLGTVVKTCFETLTFDWDTVCRHCSLKCSKYESLFDHMLQRHKEPGEIYKCPITECTIELQGAKALAMHLIVLHAPVADIPIYGSCPECSMTFSNILQYNKHSCAHVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCSYADTNLDELFHHLHYSHEPEGTLFCDLCDRNFRDPTVFLEHNKSHSNVSSTTYSCTECSANFESRGRLNGHLRTAHGSVISCEMCGREFGTEATYNVHMKTHLIIEREVHVCNNCGLLSENNDRMLAHVADEDSSCFGMDVVAELMRDAYVCEYCSAYFKQKSDLSAHRNSGVHKDGQFWCHPCSKKFTDMKLYRLHLRNYQQLRTDFSHRRLEICLYYMCDNEKCTVAYINWNSLYTHKRRTHDAAEKQEPKLKGNEWICQFCQKVCRSKMSLSVHVARSHNNNNVACSLCKASYKDEEALKKHHAYWHERIECPMCLKVVKNRRNYDTHIKVVHSNKKRYSCSECQKGFYHKNEMEAHQRLHSQSFKCEQCNFTTRNKKSLSVHVLGQHYKRFALKCKFCDKRFGRRQGLSNHTLHVHGSKFTCRDFFEGGCGKAFASMARLNVHVRKVHYGSLFLTDDPAKLEEKQAEEEDEEEEPASDGPSTSKKRLIRISANTEIEFISNAADADDDNESLTDSEIFEEIQEVKAVAVAKQPPKKKPKPMTTRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00496807;
90% Identity: iTF_00543918;
80% Identity: -