Dlim024309.2
Basic Information
- Insect
- Drosophila limbata
- Gene Symbol
- -
- Assembly
- GCA_963924055.1
- Location
- OZ001355.1:18014536-18019891[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 2.9e-08 33.9 0.0 1 40 584 624 584 627 0.90 2 4 6.3e-14 1.6e-10 41.1 0.1 2 39 639 676 638 679 0.94 3 4 1.5e-17 3.7e-14 52.8 0.0 1 45 693 738 693 738 0.98 4 4 1.5e-19 3.8e-16 59.1 0.0 1 43 745 788 745 789 0.97
Sequence Information
- Coding Sequence
- ATGCCAAAACCCAAACTCAACTGCAAACCCAAAACCAAAGGTCTGTTACGCACCGCTgaacaattgaaaatcaaaGGACTCTGTGAGCCGGCTGAGAATGCGGATGATTTGAATGACGCTGCATCGGCGACGATAACCGTGTCGGAGAATATACAACAGGCGGTTGTTGGCAACATTGTGAATGCGAGCCTAGTGCCCGGCGCGCCCTCGCCCACAAtcgaacagcagcagcagcaccatcagcagcagcagcagcagcaacaggcacagcagcaacaacaggcacagcagcagcaacagcaggaacatcagcagcaggtgcaacaacagcagctggtgAACAGTGCATTGTTGGCGCAGCATAGTCTTGCAACAAATAGTGGCATACAATTGACCAATGCGGCAGGGCAACAGCTGCTGAGCAACACAAGTGGCAGCAGTAGCAGtctgcaacagttgcagcaacagcaacaacaacagcagcaacagcaacagttgcagccgACGCCGCGTAAATCGCGATTGCGTAAACGTTCAAAATCGCCAGATTTGCAACTAGGTGGCAGCGCCGCAGTGCAACAACCTCAGCCGGCAcatcaccaacaacaacatcagcagcagcaacaacaacaacaacagcagcaacaacaacaacatcatcaacaacatcatccACAAACGATACTCATTCAGGGACAAAATCAAACATCGATCGTTAGTCTACAACAAACAGCGGACGGCAATTATATACCAGTTCCGACAACTGGCGACGATTCTGATAGCGATAATAAACCGCAAAAGATTTGCAAAACAGAACAATCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCCGCATCTGGCGTGAGCGGCCAAGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataataaaatgaCTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGATTTCTGGACTTTACACCGGAGCCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACATGTCGATCTATCGTGCAACCCCAGTACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATTCATCGGCTCGATCAATCTCCCATGCACTCGATATCGCATCATCATTCGACCGGCGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAAAGCGAAGTGATTGAGGCAAAGCACTTGGCGCatgtgcaacagcaacagcagcagcaacaacagcagcaacagcagcaacaacaacagcaacagcagcaacatgcacatcatcatcagcatttGCATGCTCAGCAATTGTTGGCGCAAagtcagcaacagcagcatcaacaacagcaacaacagcagcagcaacaacagcagcagcagcaacaacagcaacagcagcagtcaTCAGTGCATGGACAGCATGCCACGCATGCCTCACATGCGGAAATCAGTGGTGCCACTGTCATGGAGATTGATCCAAGCCAGATCAAGCATGAGCCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCAACTGGGCATATGGACATGTACAACTCGGATGGGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAAAATGAGCCGCATTATACGAATTTGGATCAGCAACACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACATTATGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCATTACAGAATGCCTTGGAGGCATTGCGATCGGGTCAAATATCGGCAAATAAAGCATCAAAAGCGTTTGGTATACCTTCATCGACGCTCTACAAGATAGCGCGTCGGGAAGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGTGCCGGTAATACGTCTGTGCAAAAAGCAAGTGCTGAATTTGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGAGAGGGCATCGAATTATCGCGTTCAAATCCAACACCTTGGTCCGAGGATGCCATGAACGAAGCATTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTTTATGGTCGCTTCAAGCGCGGCAAATACGATGTTGTGGCAAATACCAGTGGCATCTCGCTGATGAACACATCGGGCAACACGACCGGCAGCATTGAGATTATCGAACATAGTCAGGAGAATTCGtTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCGACGCCGCAGCATCATAGTACGCCACAGCACCACAGTTCGCAGCAGGGGCCGCCGACGCCACAGCATATGCAACAGCATGTGGTGCACATGCAACAGCAATCGCCGCATCAGGcgcatcatcaacagcagcagcagcaacagcacttgcaacagcaacagcagcaggatgTGGTAACATCGAGTAGCCAAGTGGTGCAtagccagcaacaacaacagcagcttcaGCAGATCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MPKPKLNCKPKTKGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIVNASLVPGAPSPTIEQQQQHHQQQQQQQQAQQQQQAQQQQQQEHQQQVQQQQLVNSALLAQHSLATNSGIQLTNAAGQQLLSNTSGSSSSLQQLQQQQQQQQQQQQLQPTPRKSRLRKRSKSPDLQLGGSAAVQQPQPAHHQQQHQQQQQQQQQQQQQQHHQQHHPQTILIQGQNQTSIVSLQQTADGNYIPVPTTGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAASGVSGQAIVTQIVVARDGKDNKMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHSTGDESNSNLVQHIKSEVIEAKHLAHVQQQQQQQQQQQQQQQQQQQQQHAHHHQHLHAQQLLAQSQQQQHQQQQQQQQQQQQQQQQQQQQQSSVHGQHATHASHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDGSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGISLMNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSQQGPPTPQHMQQHVVHMQQQSPHQAHHQQQQQQQHLQQQQQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_00519079;
- 80% Identity
- -