Dkok005090.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila kokeensis
Gene Symbol
sip1
Assembly
GCA_035042145.1
Location
JAWNLT010000262.1:12122268-12124988[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.7e-89 5e-85 285.4 15.3 3 275 431 707 429 707 0.97
2 2 0.25 2.2e+03 -2.1 0.0 245 269 722 746 713 762 0.49

Sequence Information

Coding Sequence
ATGTCGGACAACGAATATGAGCGCTTTGAAATAACGGACTATGATTTGGACAACGAGTTCAATATAAATCGACCACGTCGTCGTCAAACCAAACATCAGCAAATCTACGGCATTTGGGCCGATGACAGCGATAATGAGAGCGAGGGAGAAGTCAGTGGTCGCCGTGGCGGTAGGCGTGGCCTGGGTGGCGGCGCTGCCGGCAAAGCAAAGGACTACACGGCGCCCGTTAATTTCGTTGCCGGCGGCATTCAACAAGCTGGCAAACagccaaagaagaagcagctggaggaggGCTCCACCAAAGATGAGGCTGCTTCTGGTGAGTCGGAggacagcgacggcgacgagCCACGTCCATCGTTTGGGGgaaagcagccgcagctgatGGACAACAACGAGGATAGCTCGAATAGCTCCGATGGTGCTGATAATAAgagggagcagcagcagcagcagatgcggTCCCGGAACATTGCTGGACTGCGTCACAAGTCGCACATTGCAAGCGGTCGGAATGTTGGTGCCTGGGAGCAACATACGCGTGGCATTGGcgccaagctgctgctgcagatgggCTATGAGCCGGGCAAGGGATTGGGCAAGGATCTTCAGGGCATCCAGCAGCCGGTGCAGGCGCATGTGCGTAAGGGCAGAGGTGCCATCGGTGCCTACGGACCCGAGACGGCGGCCAGTATTGGCGGCCAGGCAAAACCACCGAAAGAAGACGACGACGTCAAGGAGGCCAGGGAGTTCAAGGAGCAGCTGACCAAGTGGAAGAAAGTCGGCGTTGAGCCGCGTGATAAGTCTGGCAAACAGCAGCGCTACTACTACAAATCCGTTGAGGAAGTCATTGCCAAGAGTCTCAAGGACAACCACTTGCTACCCGAGAAGCTGGCCAAGCAGCTTGGCAATGTGCCCGTCATCGACATGACCGGACCGGAGCGACGCGTCCTCAGTGGCTATCATGCCTTGGCCCAGAGCAAGATCACGCCCGAAGAGACACTCTACGATGAGCAGCTGCCGTCGGGCGGAGGAAAGAGTTCACCGATTAGTGTGTTTAGCATGCCGGAACTGGCGCACAATATGTCGCTGCTGGTTAGCCAATGCGAGCAGGAGATCATTGACATCGACAAGGCGAAGCGGGAGGGCCATGATCTGTATGCATCGCTGGAGCAcgagcatcagcagctgctggaacTGGTGAGTCTGGAGCGCAATCACATGAATACTTTGGAGCAGGTGCTCGCTCGTGTCGATCAGCTCAGCGAAAATCCGGACTTGACTATGTCGCAGGCGGAGGAGCTATTTCTCGACCTGCAGCGCGACTATCCCGCCGAGTTTGAGGAGTTCGGCATGGAGGATATGGCTGGTGGCGTTATTGCTCCATTGCTGCGGCGGGAACTAGTTGATTGGCGCCCGCTGGAGAAGCCCTTGCAACCGGTGGAGATGATAAAGCGTTGGTGCAACATATTGCAAAAGGATGAGGATCAGGCGCCGGCATcgttggagcagctgcagcagcggcaatcCCGCAACGTTTTCGATCCGTACTCCTCGCTAATCTGGGTCGGGGTGATGCCGTCGATTCGTACCAGCGCACTCAACTGGCAGCCCAAGGAGCATGCATCGATGGCCGCCTTCTTGGACGCATGGGCGCCAGTGTTGCCCACGTGGGTGTTGGACTCGGTGCTGGAGAAACTGGTGCTGACCCGGCTGAAGATTGGCGTTCGCGACTGGGATCCATTGACGGATACGGTGCCCATTCACATTTGGATTTTGCCCTGGCATGGACTGCTGGGTGAGAAGCTGGAGGAGTCTGTCTATCCGCAGATACGCAGCAAACTGGGTGTGGCATTGGAGGCTTGGTCACCACAAGATCGGTCCGCGCGGGCCATGCTCACGCCGTGGCAGACGGCGTTTCCCGAGGAACAGTTGCTGCAGTTCCTGCTGCGTCATATTATACCCAAACTGCAGGCGGTGCTCGCCGAGTTCATCATCAATCCGCTGCAGCAGGACTTGGAGCTGTGGCATCAGGTGTGGGAATGGCATGAACTAATACCAGCCGCCCACATGGCCCAGTTGCTTGACAAGTATTTCTTTCCACGCTGGATGCAGGTGCTCGTCATGTGGCTGAATCAGTCGCCGGACTATGCCGAAATCTCGCGCTGGTATGCCGGCTGGAAGAGCATGTTCAGCGAGGCCATCCTACGCGAGCCCTGCATCAAGGAGCATCTGCGTCGCGCCCTCGACATGCTGCACCGCGCCACGGATGCGGTCCTCCAACCCACTTCGGCCCCACCACCGCCCATGCCGCCAGCGCCCGCCCCTGTGCTTCTCGCTCCCGTAATGCTCATAGATGTGGCAGCGCCCGCTCAGTTGGAGTTCAAGGAGCTCGTCTCGCAGAAATGCGCCGAACTGGGCATCATATTCGCCCCATTGCCAGGACGACGCGAACTGGGCAAACAGattTATCGCGTGGGGAAACTATTCTGTTACATCGATCGCAATGTTTGCATGCTGAGCGATGTCAGCTTTCAGAGCTGGCAACCTGTGGCCCTCAATCAGCTCCTGGAGCGTGCCCAAACTGGCCTCATCTAA
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRQTKHQQIYGIWADDSDNESEGEVSGRRGGRRGLGGGAAGKAKDYTAPVNFVAGGIQQAGKQPKKKQLEEGSTKDEAASGESEDSDGDEPRPSFGGKQPQLMDNNEDSSNSSDGADNKREQQQQQMRSRNIAGLRHKSHIASGRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIQQPVQAHVRKGRGAIGAYGPETAASIGGQAKPPKEDDDVKEAREFKEQLTKWKKVGVEPRDKSGKQQRYYYKSVEEVIAKSLKDNHLLPEKLAKQLGNVPVIDMTGPERRVLSGYHALAQSKITPEETLYDEQLPSGGGKSSPISVFSMPELAHNMSLLVSQCEQEIIDIDKAKREGHDLYASLEHEHQQLLELVSLERNHMNTLEQVLARVDQLSENPDLTMSQAEELFLDLQRDYPAEFEEFGMEDMAGGVIAPLLRRELVDWRPLEKPLQPVEMIKRWCNILQKDEDQAPASLEQLQQRQSRNVFDPYSSLIWVGVMPSIRTSALNWQPKEHASMAAFLDAWAPVLPTWVLDSVLEKLVLTRLKIGVRDWDPLTDTVPIHIWILPWHGLLGEKLEESVYPQIRSKLGVALEAWSPQDRSARAMLTPWQTAFPEEQLLQFLLRHIIPKLQAVLAEFIINPLQQDLELWHQVWEWHELIPAAHMAQLLDKYFFPRWMQVLVMWLNQSPDYAEISRWYAGWKSMFSEAILREPCIKEHLRRALDMLHRATDAVLQPTSAPPPPMPPAPAPVLLAPVMLIDVAAPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLSDVSFQSWQPVALNQLLERAQTGLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00513447;
90% Identity
iTF_00482221;
80% Identity
-