Basic Information

Insect: Drosophila kanapiae
Gene Symbol: -
Assembly: GCA_008042475.1
Location: VNJM01000303.1:395538-403022[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.1e-05 0.0017 18.8 2.1 1 23 224 246 224 246 0.97

2 18 6.8e-06 0.00054 20.3 0.4 1 23 252 274 252 274 0.97

3 18 0.001 0.08 13.5 0.9 1 23 280 302 280 302 0.95

4 18 1.4e-05 0.0012 19.3 3.1 1 23 308 330 308 330 0.97

5 18 3.3e-05 0.0026 18.2 4.7 1 23 336 358 336 358 0.99

6 18 6e-05 0.0048 17.3 5.7 1 23 364 386 364 386 0.97

7 18 2.9e-07 2.3e-05 24.6 4.3 1 23 392 414 392 414 0.98

8 18 1.1e-07 8.4e-06 26.0 2.4 1 23 420 442 420 442 0.97

9 18 6.1e-05 0.0049 17.3 6.7 1 23 449 471 449 471 0.97

10 18 0.00011 0.0085 16.5 6.5 1 23 477 499 477 499 0.98

11 18 9.5e-06 0.00076 19.8 4.5 1 23 505 527 505 527 0.98

12 18 6.9e-06 0.00055 20.3 8.1 1 23 533 555 533 555 0.98

13 18 5.6e-06 0.00045 20.6 7.6 1 23 561 583 561 583 0.97

14 18 6.3e-07 5e-05 23.6 7.7 1 23 589 611 589 611 0.98

15 18 0.0002 0.016 15.7 9.5 1 23 617 640 617 640 0.95

16 18 7e-05 0.0056 17.1 0.9 1 23 646 668 646 668 0.98

17 18 0.00076 0.061 13.9 3.4 1 23 678 700 678 700 0.97

18 18 8.7e-06 0.00069 20.0 1.6 1 23 706 729 706 729 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.1e-05	0.0017	18.8	2.1	1	23	224	246	224	246	0.97
2	18	6.8e-06	0.00054	20.3	0.4	1	23	252	274	252	274	0.97
3	18	0.001	0.08	13.5	0.9	1	23	280	302	280	302	0.95
4	18	1.4e-05	0.0012	19.3	3.1	1	23	308	330	308	330	0.97
5	18	3.3e-05	0.0026	18.2	4.7	1	23	336	358	336	358	0.99
6	18	6e-05	0.0048	17.3	5.7	1	23	364	386	364	386	0.97
7	18	2.9e-07	2.3e-05	24.6	4.3	1	23	392	414	392	414	0.98
8	18	1.1e-07	8.4e-06	26.0	2.4	1	23	420	442	420	442	0.97
9	18	6.1e-05	0.0049	17.3	6.7	1	23	449	471	449	471	0.97
10	18	0.00011	0.0085	16.5	6.5	1	23	477	499	477	499	0.98
11	18	9.5e-06	0.00076	19.8	4.5	1	23	505	527	505	527	0.98
12	18	6.9e-06	0.00055	20.3	8.1	1	23	533	555	533	555	0.98
13	18	5.6e-06	0.00045	20.6	7.6	1	23	561	583	561	583	0.97
14	18	6.3e-07	5e-05	23.6	7.7	1	23	589	611	589	611	0.98
15	18	0.0002	0.016	15.7	9.5	1	23	617	640	617	640	0.95
16	18	7e-05	0.0056	17.1	0.9	1	23	646	668	646	668	0.98
17	18	0.00076	0.061	13.9	3.4	1	23	678	700	678	700	0.97
18	18	8.7e-06	0.00069	20.0	1.6	1	23	706	729	706	729	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGCTCGGTGCCATCAGTTGTAGCTCCCATTGTGACCACTGGTGGGACGACGATCACCTTGGGCGGACCACCACCGCTCCCCAAATCGGAGCACAAGGAGGATGGCAAGCCGCCGCACGGCATTGAGATGTACAAGGTTAACATCGAGGACATCTCGCAGCTCTTCACCTATCACGAGGTCTTTGGCAAGATCCATGGCGATGTTGTGAATCATCAATTGGCGGCGGCCCATGGAGGTCAgctgccaccaccgccgcccctTCCACCGCAGGCCACTAGTCATGCGGCCAGTGCGGCAGCAGTGGCCGCAGCAGCGTCTACAAATAATGCCGCTGTGGCGGCAGTAATGGCCTCCGCCAAtgcagcggcggtggcagcagcggctgcatCGGCAGCGGGCGGCGGTGTAGGACTGCCGCCGGCCACCAGCGGCAATGGGGGCCAGCAGGTGACGGTGACGACAACCAGTTCGACGGCCAGCAGCGGCGGGAGCACCACCAGTGGGGGCACCACGACCACGGCGGGTGAGTTGCTTATGCCTAAAATGGAGGGCGGCATTCATGGCGTGGACGGCAgcggcaatggcggcggcaacggcgggcAGAACGTGGCGCTGGCGCCGGACGGTACGCCAATTGCGACGGGGACGCACGTCTGCGACATTTGCGGCAAGATGTTCCAGTTCCGGTACCAGCTGATCGTGCACCGGCGCTACCACAGCGAACGGAAACCGTTCATGTGCCAGGTGTGTGGACAGGGCTTCACCACATCGCAGGATTTGACGCGCCACGGCAAGATACACATTGGCGGGCCCATGTTCACCTGCATCGTGTGCTTTAATGTGTTCGCGAACAATACGAGCCTGGAGCGGCACATGAAACGGCACTCGACGGACAAACCGTTCGCCTGCACCATTTGCCAAAAGACTTTTGCCCGCAAAGAGCATCTGGACAATCACTTTCGTTCGCATACGGGCGAAACGCCCTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACGCCGCACCAATGTGATGTCTGCGGCAAGAAATATACGCGCAAGGAGCACCTAGCCAATCATATGCGCTCCCACACTAACGAGACGCCGTTCCGTTGCGAGATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCACACAGCAGGCGAGACGCCGCACCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGCTTAATCACGTGCGCCAGCACACGGGAGAGTCGCCACACCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTCAACCACATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACGCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAGTCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACGCGCAAGGAGCACCTGACGAACCATGTGCGCCAGCACACGGGCGACTCCCCGCACCGCTGCTCCTACTGCAAGAAGACGTTCACGCGGAAGGAGCACCTGACGAACCATGTGCGCCTCCATACTGGCGACTCGCCCCACAAGTGCGAGTACTGCCAGAAGACGTTCACGCGGAAGGAGCATCTCAACAACCATATGCGCCAGCATTCGAGCGACAATCCGCACTGCTGCAATGTCTGCAATAAACCGTTTACGCGCAAGGAGCACCTGATCAATCATATGTCGCGTTGCCACACCGGCGATCGGCCCTTCACCTGCGAGACATGCGGCAAATCGTTCCCGCTCAAGGGCAACCTGCTCTTCCATCAGCGAAGCCACACCAAGGGCCAGGAGATGGAGCGGCCCTTTGCCTGCGAGAAGTGCCCCAAGAATTTCATCTGCAAagGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGTGAGAAACCGCACGCGTGCACTCTGTGCAGCAAGGCGTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACGCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCACCACTCGGCGACCACCACGATGCACACTATCCAGCAGATAACAGCCGGGGCGGCTGGCGGTGCCGGTGCCGTCCAGCTAACGCCGGGCCTGGTGCCACTGGTCACCTCAACGCTCATCTCGCACAAtgccgccgcccagcagcaaTCGCAGAAGCAAcaggcagccgccgcagcagcggcCCAGCAACAGGCTgccgcggcagcagcagcacagcagcaggctGCTCAGcaacaggcggcggcagcccatcagcagcaccagcagcaagtGGCGGcccagcatcagcaacaggcGGCAGTGGCTGcccatcaacagcagcagcagcagttacagcagcaacaacaattgctaCAGTTGTCCATCCAGCAGGCGGCGCATCATCAccaacaggagcagcatcgccagcagcaacagcagcagcagcagcagcaacaccagcaacaacagcagcagcagcaacaacagcaacagcaacagcagcaccatcagcagcagcagcaacagggcCATCCTGGCcaggcgccgccgccgcagcaacaACCGCCACCAGGAGTGCCCATCGCCTTGATAAGTGATCCCAGTGCTTTGGCCCGCGCCGCCATGCAACTGCAGCATCTGCCAGCGAACGTCGAGCAGCATCCTGTGGTTTACTAA
Protein Sequence: MQHVSAASSVPSVVAPIVTTGGTTITLGGPPPLPKSEHKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAHGGQLPPPPPLPPQATSHAASAAAVAAAASTNNAAVAAVMASANAAAVAAAAASAAGGGVGLPPATSGNGGQQVTVTTTSSTASSGGSTTSGGTTTTAGELLMPKMEGGIHGVDGSGNGGGNGGQNVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAGGAGAVQLTPGLVPLVTSTLISHNAAAQQQSQKQQAAAAAAAQQQAAAAAAAQQQAAQQQAAAAHQQHQQQVAAQHQQQAAVAAHQQQQQQLQQQQQLLQLSIQQAAHHHQQEQHRQQQQQQQQQQHQQQQQQQQQQQQQQQHHQQQQQQGHPGQAPPPQQQPPPGVPIALISDPSALARAAMQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00505532;
90% Identity: iTF_00507738;
80% Identity: -