Dins011301.1
Basic Information
- Insect
- Drosophila insularis
- Gene Symbol
- -
- Assembly
- GCA_018903935.1
- Location
- JAEIFP010001763.1:5630670-5631473[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.4 8.4e+03 -3.0 0.5 58 65 12 19 8 24 0.55 2 3 6.3e-15 8.3e-12 45.1 15.1 5 69 145 209 143 210 0.97 3 3 0.45 5.9e+02 0.7 1.4 6 13 232 239 222 245 0.66
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGCCGTGCGATGTGCAATTTGTGCGTTGCTTGAAGTGTCTCAAGGTAATTAAATGCTCACGCTATGATACCTATGGATTGGTGCAGCATGTCACTCAGGATCATCCGGAAATTATGGAAGAAGCGAACGTGAAGATCAAAAATCTATATAAATTAGCTGCCGCCCATGGAATTAGTCAGGAGAGGCTATCAGAGATAAGCAAAAAGACAGGCATGTCGGAGGAGCGATTGGCCGATGAGGCAGAAAAGTATATGGCCAAGAAGAAGAAAAGTGGAAGCAACTTGTCAATTGCAGCTTCTGGTCAGAATGTTGCCGAAGGATTGTCCTTTAGGCCCAATCGTGCCAAGGCCTGCGATTCAAGAGACTTGAGTCGTCGTCAATATTATCGGGCTTCGATTGAACGTTGGACAGCCCCAGATGGGGCCATCTATTGCCCTAGTTGTGGCTGCTGTCGTCGCCCAGTGATCCAGACTAAAAACGAATTTTACAAGAGCACGGGATGCTGTGCTGCCTGTTTGATTAGTTGTTGGCCCTTTTGTTTTCTACCTTGTCTCATTTCACCTGAGAATCGGGAATATCTACATTGCCCCAGTTGCAAAACCTTTCTGGGCCTCTATGATCGTGAGAATAATTGCGTCAAACCGAATCGTGATTTTGTGGCTTGTCCTTTACCTACTAAATCCTGTTCCTGTCCCAGCTGCAGTGCCCGGCCCAGTTCAAAGAAATGTCAATAA
- Protein Sequence
- MSEVPCDVQFVRCLKCLKVIKCSRYDTYGLVQHVTQDHPEIMEEANVKIKNLYKLAAAHGISQERLSEISKKTGMSEERLADEAEKYMAKKKKSGSNLSIAASGQNVAEGLSFRPNRAKACDSRDLSRRQYYRASIERWTAPDGAIYCPSCGCCRRPVIQTKNEFYKSTGCCAACLISCWPFCFLPCLISPENREYLHCPSCKTFLGLYDRENNCVKPNRDFVACPLPTKSCSCPSCSARPSSKKCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00612490;
- 90% Identity
- iTF_00612490; iTF_00618830; iTF_00571581;
- 80% Identity
- -