Dinc011129.1
Basic Information
- Insect
- Drosophila incognita
- Gene Symbol
- -
- Assembly
- GCA_035042225.1
- Location
- JAWNLQ010000657.1:2601672-2606157[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-14 3.6e-11 42.6 0.0 7 72 319 380 314 384 0.89
Sequence Information
- Coding Sequence
- ATGAACTCGACATCAACAGGCTTATCTAAAAAAAGATCCAGCCGCTCAAGATCGCGCTCAAGGCATATTTATGAAGATACACGCTCAAGCAGCGATTGGTATTCTTCAAGCTCAAATGACAGTCGTAAAAGACTCAGGATCAGACGCAGCCAAACGAGGGAGGAGGCTATAGTGGGTTGGGAGGGCAATTTTCCGAATTTCCTGGAGAGCAACTCAGACGTGGAAGAGATGCACCAGCTACCCACTGAAGAAAAGGCCGTTTATGTCACTGGGCTCAGCATTTTTCCCAGAGagcaagaggaagaggaacaatcgcagccgcagccagcACCGCAGACACCGCTATCATCAAAGCCGTCGTCTGATTCTGATTCCTCATCCCCCGTTTCAAATATGAATTCAGCtctaacaacagcaacagtcacAGCCACATCAAACACAACAGCTATAAgcacacatgccacaaattCGACTGAGGCAGGTCTAAAGACTGCTATGCAGACAATCAACACCAACTGCGATATCAGCGATATCAACATTACCAGCAATCATGACAGCGGTTCAACCTCAATGCCAAGTGCAACATCTTCTCCACAACCATTAGCAGAGCCAAAAACAGAATCAGAACCACAAACTGATTTAGACAAGCAGAAGGTGGCGTTAGAGGCCTCGCAAACCGGCAAACCCTATGCAGGAGAAGGAAGAGGAGACAGCATCTCGAGGAGCCTGCGCTCTCGCATGTGCTTTACATCCTATAGTGCATCATCCAGCAATGAGGCCAGCGAAACGACAAATCACCTCAAGAAATCAACAGAAGACAAGGATCATCCACCCAgcatgctgttgttgcgctcCAAATCGATGTACCAATGTGACCCCACTATTAGTGATGCAAAGACGCGCAAACGCCGTCGCTCGGTTTCTGCGAATAATTTGTCGGTCACAGATCCCTTTTATTGCTTGCCCTTCGAGCACGGCTGGAAGCGTGAATTGGTGTTGCGTAGCAGTGATAACAAAGCGCGCCAGCGAGCCGATGTTGTATTCATATCGCCTTCGGGCAGGAAGCTGCGCACGAGAAATGACATTATCCCACTGCTTGTGCCCGATCTGTCAATTGATCATTTTTGCTTTAAGCCCGAGCTTCAAAATGTTGGCGAGCAATACGAAACGGTCCGCCAGGGTCAGACTGCTAAGGAACGTCGCAAATCGATGTACGTTGCAAGGCAGGAGAAACAGCAAGGGCAAGGGCaacagaagcaaaaacaacaaggacagcagcaacagccacaacaacagcagcaacagccacaacaacagctgcaacagccacaacaacagcagcaacagccgcaacaacagcagcaacagccacaacaacagcagcagctggctaACACCATCGATTTGGGCCAACAAGCAGCATCAGCGCTAACACCCGTATTCGGGAAACGTGTGCCTAAGCCTAAGGTGCCCAAGGGCGCTAGCCCGCCGCACGAGGGTTGGACCTCAACGATGGCGGTCAAGGGAAATGCTCGCGTCCTGGCTGCGAGCAATGGTAACAGTGGCGGCATCGGCTCTAGCGCCAGCAACAGCGCACGCAGACGTGGCAGCAACCAGGCGAACAAATCAACAAAGGCAGCACCAGAGACACCGACGGCTGTGCAGTCGAAGCTGCCGCTCCAGCCGCAGTCAGCAGTTAAGACGATACTAACTTGTGCGAAATGCTTGCAGGCAATTAGTGACACCAATCAAGCATTTCGTGTCGGGCTGAGCACTGTCGAGAGCTACATCTGCAAGCGCTGTGTTATGCCAGGCAGCAATGCTTCCCTTTCACCGACAGCAGATATAgcacgacagcagcagcaggcacgtGGACATGGACATGCAAGTGTCAATGACAATGGCAATGGGAACAATAAACTGGATAAGGAAGTGATCGATGAGAATGTGAACGCCGCCGGTAATGGGGTCATCGTCAAAGAGATTGAACTGCCCGGCGCTCTGCCGCCTGCTAAGCTGCTCAGAGATGATTCTCCTGCACGTCGTGGCGGTAGAAAGATAACGCCAAAGCCAATGgaggttgttgttattaacaGTCGCAAGGCTCTCGCAGTTGCTGTCGAGCCACGGCGTACGCGTGCGCAAATACCACTCTTTACAGGCGCTCCGAACTTGGCCATCAATGCAAGAGTTTTATCTAGGCGCAACTCAGCTTTACGTAAGCAAGTCGCTGATTGTCTTTCTGGTGGCATTGAGGGTTGCATGCTGATGACGGCCATTATGAAGGTGGTTGACCTGCACGTACGTGTGCGCTTGTCTAGTGTGTGCAAGACCTGGTCTATGATATACCACGATAGCAGCGTGTGGCGCGAAGTGAAGTTGCGCGATACGCTCATCACCAACTGGAAGCTTCTGCTGCATTATATGAAGGTCTATTGCACCACCGAGCTCGATATGATGGGCGTGAAATTCGACAATCCGAAGATGCGCTTCGACGGTGATTTGCGAGATTTGAAATCGTTGCGTATTCTACGCACCGATGCCTGCGAGGCGAAGTTCATCGAGACAATTGTGGATAGCATGCCACAATTGCTGGAGCTGCGCGCAACTTGCACCAGTCGTGCTCTGAACCTGGCCAACATCGAAACGATGTTGGATTTGCGTGTGCTGCGCATTCGCATGCTGGAGCCGCAGGCCAGCATAATTtcattgccgctgctgcagaagTTAAGCTGCTTGCGAGAACTGAGCTTGCGCGGCATTAGCAACATGAAACAGCTggagctgttgcagctggagGGATTGCAGCAGTTGGAGACGCTTGTGCTGGGCTCGTGTCGCAGCATGGAGGTTGCAACGTTTGGGCAACAAGTGCTGCCCAGTCTGAAGCGTTTGCGCCACTTGCGCCTGGAGAACCACCACAACAATGGctcatttaatataaaagaGATCATGAATGGCATTGCCGCCGCTGGCAGTGTGAAGCGTGTCGAACTCATCAATGTCAACGTAGATGCGGAGTTGAGTCATCAGTTGTCCGAGTGTAAATCGTtgcaggagctgctgctgatgccaaATTTCCACGATTGTACCGCTTATATGGTGCACTACATTATGCAGGCCATCAACGAGAACAGCGATCAGCTCAACGTGTTCCACCTGGGGATCACCTACGAACTGCTCAGCGTGACTCGGGCATTGGCCATGATCCACGAGAAGGACTGTGTGCCAGTGCTGCTGCCAATTCCGGGCGTTGCCGAAAATGATGTACTGAATGAGTCCGATGAGTCAATCGCCTATTTGCCGGTCGATCGCCTCGAATCGATTTTACATCACATGATGCCTCAGGCTTGGCTAACCGTCGCCAAGGTTTCACAGCTCGAGACAATCAATCTGAAATTCGTGCCGGCTCCAATCGCCGTCAAAGCCGgctttttaaacaaataa
- Protein Sequence
- MNSTSTGLSKKRSSRSRSRSRHIYEDTRSSSDWYSSSSNDSRKRLRIRRSQTREEAIVGWEGNFPNFLESNSDVEEMHQLPTEEKAVYVTGLSIFPREQEEEEQSQPQPAPQTPLSSKPSSDSDSSSPVSNMNSALTTATVTATSNTTAISTHATNSTEAGLKTAMQTINTNCDISDINITSNHDSGSTSMPSATSSPQPLAEPKTESEPQTDLDKQKVALEASQTGKPYAGEGRGDSISRSLRSRMCFTSYSASSSNEASETTNHLKKSTEDKDHPPSMLLLRSKSMYQCDPTISDAKTRKRRRSVSANNLSVTDPFYCLPFEHGWKRELVLRSSDNKARQRADVVFISPSGRKLRTRNDIIPLLVPDLSIDHFCFKPELQNVGEQYETVRQGQTAKERRKSMYVARQEKQQGQGQQKQKQQGQQQQPQQQQQQPQQQLQQPQQQQQQPQQQQQQPQQQQQLANTIDLGQQAASALTPVFGKRVPKPKVPKGASPPHEGWTSTMAVKGNARVLAASNGNSGGIGSSASNSARRRGSNQANKSTKAAPETPTAVQSKLPLQPQSAVKTILTCAKCLQAISDTNQAFRVGLSTVESYICKRCVMPGSNASLSPTADIARQQQQARGHGHASVNDNGNGNNKLDKEVIDENVNAAGNGVIVKEIELPGALPPAKLLRDDSPARRGGRKITPKPMEVVVINSRKALAVAVEPRRTRAQIPLFTGAPNLAINARVLSRRNSALRKQVADCLSGGIEGCMLMTAIMKVVDLHVRVRLSSVCKTWSMIYHDSSVWREVKLRDTLITNWKLLLHYMKVYCTTELDMMGVKFDNPKMRFDGDLRDLKSLRILRTDACEAKFIETIVDSMPQLLELRATCTSRALNLANIETMLDLRVLRIRMLEPQASIISLPLLQKLSCLRELSLRGISNMKQLELLQLEGLQQLETLVLGSCRSMEVATFGQQVLPSLKRLRHLRLENHHNNGSFNIKEIMNGIAAAGSVKRVELINVNVDAELSHQLSECKSLQELLLMPNFHDCTAYMVHYIMQAINENSDQLNVFHLGITYELLSVTRALAMIHEKDCVPVLLPIPGVAENDVLNESDESIAYLPVDRLESILHHMMPQAWLTVAKVSQLETINLKFVPAPIAVKAGFLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00593095; iTF_00597354; iTF_00496592; iTF_00482226; iTF_00609877; iTF_00574042; iTF_00558655; iTF_00497379; iTF_00566785; iTF_00560264;
- 90% Identity
- iTF_00574042;
- 80% Identity
- -