Dham017687.2
Basic Information
- Insect
- Drosophila hamatofila
- Gene Symbol
- Aef1
- Assembly
- GCA_035045345.1
- Location
- JAWNPA010000054.1:4245218-4246356[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0076 38 4.7 0.1 21 51 196 226 190 228 0.86 2 4 3.6e-05 0.18 12.1 0.0 21 52 224 255 222 256 0.89 3 4 0.038 1.9e+02 2.4 0.1 21 48 252 279 250 283 0.85 4 4 0.00011 0.57 10.5 0.1 21 47 280 306 278 313 0.88
Sequence Information
- Coding Sequence
- ATGATGCATATCAAGAGCCTGCCACACGCACATCAGGCCGCCGCGGCAATGAGCAATTGCGACATTGTGATTGTTGCCGCGCAACCGCAGACCACgagcgccaacaacaacaacaatgacactGTTACACAGGCCAGCCATGTCAGCCATGTGGCAGCTcaacaacaacaacaacagcagcagcaacaacaacaacaacaacaacaacagcagcaacaacaacagcagcaacaacaacagcagcagcaacaacaacacaatcaacagcaacaacagccgcccGCGCCCACAGATGTATCCCTTCCCTTCATGCACTTGAGCGGAATTTCAGCGGAGGCTCACAGTGCCGCTCAGGCGGCCGCAATGGCAGCTGCGCAGGCCGCGGCAGCGCAAGCCGCCGCTGCGGATCAACAGCAGCCATCAGCACCACCTGCACCACCAACGTCGCACACGCTGGCCCATCTGGTGGCCAATGCTACGCATAGCCCCACCCTGGGTGAAACCCACTACGTCAGCAATGGGCACTCGAACAATGAGCATTCGGGCGAGGGCAACGGCTCGAGTGGCAGCGCTGGCGGCCGGGAACCAGAGAAGCCGTTCCATTGTACGGTATGCGATAGACGATTTCGGCAGCTGAGCACACTGACCAACCACGTGAAGATCCATACGGGCGAGAAGCCCTACAAATGCAATGTGTGTGATAAGACGTTCCGTCAATCGTCGACACTGACGAATCATTTGAAAATTCATACCGGCGAAAAACCGTACAATTGCAACTACTGTCCCAAGCATTTCCGTCAGCTGAGCACATTGGCCAATCACGTCAAGATTCATACGGGTGAAAAGCCGTTCGAATGCGTGATATGCAAGAAACAATTCCGGCAATCGAGCACGCTCAACAATCACATAAAGATCCATGTCATGGACAAGGTCTACGTTCCTGTCAAGATCAAAACGGAGGAGGACGAGGGATGA
- Protein Sequence
- MMHIKSLPHAHQAAAAMSNCDIVIVAAQPQTTSANNNNNDTVTQASHVSHVAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHNQQQQQPPAPTDVSLPFMHLSGISAEAHSAAQAAAMAAAQAAAAQAAAADQQQPSAPPAPPTSHTLAHLVANATHSPTLGETHYVSNGHSNNEHSGEGNGSSGSAGGREPEKPFHCTVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNYCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00473280;
- 90% Identity
- iTF_00516484; iTF_00544874; iTF_00544711; iTF_00540750; iTF_00540586; iTF_00477007; iTF_00476845; iTF_00531343; iTF_00531169; iTF_00572975; iTF_00572811; iTF_00510194; iTF_00510026; iTF_00546869; iTF_00547022; iTF_00526966; iTF_00526795; iTF_00568470; iTF_00568629; iTF_00479833; iTF_00479691; iTF_00502905; iTF_00502744; iTF_00582618; iTF_00582467; iTF_00551963; iTF_00551802; iTF_00559707; iTF_00559875; iTF_00513116; iTF_00512950; iTF_00599964; iTF_00599802; iTF_00494045; iTF_00493874; iTF_00532765; iTF_00532591; iTF_00545630; iTF_00545459; iTF_00573535; iTF_00573703; iTF_00473280; iTF_00473441;
- 80% Identity
- iTF_00516484;