Basic Information

Gene Symbol
ct
Assembly
GCA_035042305.1
Location
JAWNLN010000066.1:11215803-11235007[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 8.8e-27 7.2e-23 80.3 0.0 3 71 771 840 769 846 0.94
2 3 6e-32 4.9e-28 96.8 0.0 3 77 1254 1329 1252 1331 0.96
3 3 3.6e-31 2.9e-27 94.3 0.0 3 76 1546 1620 1544 1623 0.96

Sequence Information

Coding Sequence
ATGTCCGAGCTGTGCAGTCATCTGCCACCCACCTGGACCAGCTCCATCGCTCAGCTGCCCCCTGCCAAAATTCCCAACTATTCGCATTGTtggaaaaatATTAAAGCACTTTTGGATGAGTTGCAACGCCTGCGTGGCCTGGAACAAACTCACCTCGTACAAATCCAAAGGCTCGAAGAGCACTTGGAGGTGAAGCGACAGCACATAATGCGTTTGGAGGCACGTTTGGATAAGCAACAGATAAATGAGGCACTTGCCGAGGCAACTGCATTGGCTGCCGCTGTTAATGCGGCTGcgacaaacaataacaacaacaacaacaacaacaatagcagcagcaacaacaacaacaacaacaatcacagtAGCCAGGCCAGCGAAATCAACAACGAGTTGAGCGCGGTGTTTAAATCAACAGATCTAACATCTACCCATCAGCACAATGACGATgaagacgatgatgatgataatgataaccATGCTGAGCTGCGcgacgatggcgatgatgatgaggaggacACGGATATGgccagcgagcagcagcacgCTGCCATTGGCAACAATCGGCACAACGATGACAACGAaaaggacgaggacgaggagcAGGATGCCGATCTATCcaatgccacagccacagcggACAGCAATGAGCTGAAAATCAAAAAGGAACAGCACAGTCCACTGGATTTGAATGTGCTTAGCCCACATTCGGCGATTGCCACAGCTGCCGCggccgcagcagccgctgcctGCGCCAACGATCCGAACAAATTCCAAGCTCTGCTCCTGGAGCGGACCAAAGCGCTGGCCGCCGAGGCACTGAAGAATGGCGCCAGCGAGACAGCGAATGCAAGCAGTGATGAAATgccgcaacaacaagcagcagacgcagcaacagccgctgATCAAGTAACAGTAGAAGATGATGccgatgaagatgaagatgcaGATGAAGATGCAGATGAAGATGAAGCACAAgaagcagcaagagcagcaagagcagcagccacatccaAATCCAAACCAGAAACAATCACAAATGCAACGGAAAAGCCTGAAAATGATGCATTGACCGAGGCCAACTTGCAGCCCAAAATCGAAATCATTGACACAGACGACGCTGATGGGGGGGCCGGCACTGAGATTGCCGCTGGGCAAACGCTGGAAGAACAGCTGGTCAACAGCTATTGGAGGCGCGGCTTTGAAACatcaacagtagcagcagcagcagccgcagcagcagccgcagcagcagcagcagcagcaacgacaacagcagcagcagcagcaacagcagctgcagctgcagcagccactggGAGCAAAACGCcaacaatttatcaaaatgccaatgtggtgcagcagcaactgttgccgccaccgccgccgccgctgccgccgtcacaacagcagcagcagcagcagcagcacttttctgcacagcaacaacaacaacaacaacaacaatatcaccaacagcaacaacaacaacaacaacagcagcagcaacatggaCCCTCGTCCACAGTGCTACTAAGTCAATTGGTTAACTCAACTTTCTTACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCACACGCCTAGATGCCGCAtcccaccaccaacaccaacaccagccgcatcagccacagcagcagcagcagcagcagcagcagctgcttcaacagcagcaacatcaccacaacagcagcaatagcagcaacagcagttcaGCAGCCGGCAGCGATCCACTGaatccacatcatcatcatgcgCACCACCATGGCCATCCACATGGACAGCTGTTGCATGCAGCACATCATCTGCATCACGGCGCCGACTCGAACTCATCCAGCGCCAATAGCACACCCAACAGCACCGCCCAGCTGGCGGCCAGCATTGCCAGCACGCTGAATGGCAACAAGTCACTGTTGCAGGCAGCGGCCGCTGCCaatgtggcagctgttgctgccgttgccgaggacaacaacaatagcctGACGCCAAATGCGAATGCGGCTGTCGCCGCTGCAGCAATGGCTGCCCATGCACAGCACGCGGCCGCATTGGGTGCACCCAGTTTTCTGCCCAATTTGCCCAGCCTGCCGGCGTTTCAGTTTGcggccgccgctgccgctggccAGGATCCTCGAGCGCAACATTTTCGCTTCGCGGATGCCGAACTGCAAATGCAGCCGGGCGTCTCGATGGCCGGTCGATTGGGTGAATCGCTAATACCCAAAGGTGATCCCATGGAGGCCAAACTGCAGGAGATGCTGCGCTACAACATGGACAAGTATGCGAATCAGGCCCTCGACACACTTCACATCTCGCGACGCGTACGCGAACTGCTCTCCGTGCATAATATCGGCCAGCGGCTGtttgccaaatatattttgggaCTGTCGCAGGGCACCGTCTCCGAGCTGCTGAGCAAGCCGAAGCCCTGGGATAAGCTAACCGAGAAGGGTCGCGACAGTTACCGCAAGATGCACGCCTGGGCCTGTGATGATAGCGCCGTCATGCTCCTCAAGTCCCTCATCCCCAAGAAAGATTCGGGATTGCCACAGTATGCTGGTCGCGGCGCTGGTGGCGATGATTCCATGTCCGAGGATCGCCTTGCACACATACTCAGCGAGGCCTCGTCCCTGATGAAGAGCAGCGCCGTCGCcgcacagcagcaggagcatcAGCGTCGCCATGTCGTCGACGATACGCACAGCAACGAGGACAGCAAATCGCCGCCGCAGAGCTGCAGCTCCCCCTTCTACAAGGACCAGCAGATTAAGCAtctgcagccgcagcagcagcagcagctgcagcatgcCACCGAGCATGCACAGCGCGAACAGCGCGAAGCGGCCGCCGCCGTTGTTGCcgtgcaccagcagcagcagcagcagcagcgggagcagCGCGAACAGCGCGAGGCCGCTCAgcgtgagcagcagcagcgcattcGTCACGACGAGCTGGGACCGGACAAGATGGCGCGTCTCTACCAGGAGCTAATGACGCGCACGCCACGCGAAGCAGCCTTCCCAAGCTTTTTGTTGACGCCGTTCTTTGGCGGAGCCGCTGGCATGCCTGGAGCAACCGCCAATCCATTCCCCACAGCAATGGCCGCCGACGAGAATATGCGTCATGTGCTCGAACGTGAGATAgccaagctgcagcagcagcaggcacagcagGTGCAGCAGGCTGCCAGTTTTCCCAACTTTTCCAGTTTGAtggcactgcagcagcaggtgctgAACGGTGCGCAGGATCTGTCGCTGGCCAACAAGGATATCAAGTTAAATGGACAGCGCTCATCGCTCGACCAGCAcagtggcggcagcagcagctgctccaagGATGGCGAACGTGGCGACGATAACGACAGAAGCTATCCATCCCTGTCGCATGCTGCTCGCAAATCGGAGGGCGGCAACACACCAGCACCGCCAGCACCATCACTAACACAGACATCGgcgggcagcggcagcaattcAAATGCGGCCAACTCAACGGTTGCCAGCGGTCATGGCAGCAACTCAGCGGCACCCAGTCCGCTGAGCAACTCAATACTGCCGCCAGCGCTGAGCAATCAGGGTGAGGAGTTTGCGGCGACGGCGAGTCCACTGCAGCGAATGGCATCGATAACCAATTCCCTGATTACCCAGCCGCCTGTGACGCCGCATCATTCACAGCCGCAGCGGCCAACCAAGGCGGTGCTGCCGCCGATCACCCAGCAACAGTTCGATATGTTCAACAATCTGAACACCGAGGATATTGTGAGGCGAGTGAAGGAGGCGCTCTCCCAGTACAGCATCTCGCAGCGTTTGTTCGGTGAGTCTGTGCTGGGATTGTCGCAGGGTTCCGTTTCGGATCTGTTGGCACGACCCAAGCCTTGGCACATGCTGACACAGAAGGGTCGCGAGCCGTTCATACGCATGAAGATGTTCCTCGAGGATGACAATGCGGTGCACAAACTGGTCGCCAGCCAGTATAAGATTGCGCCTGAGAAGCTGATGCGCACGGGCAGCTACAGCGGCAGCCCCCAGATGCCCCAAGGATTGGCCAATAAAATGCAGGCGACGCTGCCCATGCAAAAGATGATGAACGAGCTGAAGCTGCAGGAGCCGGCGCAGGCGCAACACATCATGCAACAGATGCAGGCAGCCGCCGCAATGTCGGCagcaatgcaacagcaacagcaggcagccGCCGCTCAAGCTGCCGCCGTACAACAGGCGCAGGCACAGGCTCAAGCTCAGGCCAGCCAGCACCAGCAGgcgcagcatcaacagcaacagcatcaacaggtccatcagcatcagcaggccCAACAGCAGGCGCAGGcgcaggcacaggcacaggcacaggcgcAGTTGCTGCATCATCAGAATATGCTGCTGACGTCGCCCGGCTTGCCGCCGCAACACGCGATCAGTCTGCCGGCAGCGGTCACCCCGAGTGGCATCCAATCGGGTGCTGGCAATCCAACGGCAGCGGGCAGCACTCCGGGCAGCAACGAGAAGAAGCCAATGATGATGCCGGTGCTGGGTGGTGCACATGCACCGAATGCAATGCGCAGTCTGCATCAGCATATGTCGCCCACGGTTTACGAGATGGCCGCCCTCACCCAAGATCTGGACACGCACGATATAACAACGAAAATTAAGGAGGCTCTGCTCGCCAACAACATTGGCCAGAAGATCTTTGGCGAGGCGGTGCTGGGTCTGTCGCAGGGCTCCGTCTCGGAGCTGCTCAGCAAACCGAAGCCGTGGCACATGCTCTCGATCAAGGGTCGCGAACCGTTCATTCGCATGCAGCTGTGGCTGAGCGATGCCAACAATGTGGAGCgtctgcagctgctgaagAACGAGCGACGGGAGGCGAGCAAGCGGCGACGCAGCACTGGCCCCAACCAGcaggacaacagcagcgataCGTCCAGCAATGATACGAACGATTTCTATACGAGCAGCCCGGGACCGGGCTCTGTCGGTTCATCGGTGGGCGGTGCACCGCCCAGCAAGAAGCAGCGTGTCCTCTTTTCCGAGGAGCAAAAGGAGGCGCTGCGCTTGGCATTTGCGCTGGATCCGTATCCGAATGTCGGCACCATTGAGTTTCTGGCCAACGAGCTGAGCTTAGCGACGCGCACCATCACCAACTGGTTCCACAATCATCGCATGCGGCTCAAGCAGCAGGTACCCCATGGCCAGCCGGGCCAGGACAATCCCATACCCAGTCGCGAGAACACAAATGCAACGCCCTTCGATCCCGTCCAGTTTCGCatactgctgcagcagcgtctCGTCGAGCTGCACAAGGAACGCATGGGCTTGAGTGGTGCGCCCATTCCCTACCCACCGtatttcgctgctgctgcactgctcGGTCGCAGCCTGGCCGGCATACCGGGTGCGGCGGCTGCAGCCGGTGCAGCGGCAGCCGCGGCTGCCGCAGTGGGTGCCGCCGGCGGCGATGAGCTGCAGGCACTAAATCAAGCATTCAAGGAACAGATGAGCGGCTTGGATTTGTCGATGCCAACGCTGAAGCGCGAGCGCAGCGATGACTATCAGGATGAGCTCGAGCTGGACGCCAGCGGACACAACATGAGCGACAACGAGTCCATCGAGGGTGGCAGCCACGAGCCGGAGCACACACCCATCACCGAATACGAGAAGGCGCTGCAGAAATCGGCGCTCGCCTCGGCTGCGGCCGCTGCTGCATATATGAGCAATGCGGCGCGCAGTTCGCGTCGCAAGCCGGCGGCACCGCAGTGGGTCAATCCGGCGGGTGCCAGCACACCGACAGCGGCTGGTGTCGCCGCGAGCAACGCTGGCGTCGAcatcggcggcagcagcagcagcagcgagcggATCATCAACGGTGTCTGCGTCATGCAAGGCTCCGACTACAATCGCGATGAGAGCGACAGCATCAaaggtggcggcggcggcggtgacTCCAATGCTGCCGATGCCGAGCACGACGATCACGCCCAGCTGGAGATTGAGCAGCGTTTCATGGAGCCCGAGGTGCGCATCAAGCAGGAAgaggacgacgaggacgaacaagcccagcagctgcagcagctgcagcagcagcagcagcaaaagcagcagttAGACGATGCAACGCCTCTCGACAGCGATGCGGAGAAGCAGCTCAACGTGATCAATGAGGAGAAGTTGCGTTTGGTGCGCGTGCGGCGCCTCAGCAGCAATGGCGATGCCGACGAGCACTGCGCTGCTGCACAGCAGGCGACGACAGCCGGTGCGGCAGCGTCGCCGGCAGCAACATCATGGAACTACTAA
Protein Sequence
MSELCSHLPPTWTSSIAQLPPAKIPNYSHCWKNIKALLDELQRLRGLEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAVNAAATNNNNNNNNNNSSSNNNNNNNHSSQASEINNELSAVFKSTDLTSTHQHNDDEDDDDDNDNHAELRDDGDDDEEDTDMASEQQHAAIGNNRHNDDNEKDEDEEQDADLSNATATADSNELKIKKEQHSPLDLNVLSPHSAIATAAAAAAAAACANDPNKFQALLLERTKALAAEALKNGASETANASSDEMPQQQAADAATAADQVTVEDDADEDEDADEDADEDEAQEAARAARAAATSKSKPETITNATEKPENDALTEANLQPKIEIIDTDDADGGAGTEIAAGQTLEEQLVNSYWRRGFETSTVAAAAAAAAAAAAAAAATTTAAAAATAAAAAAATGSKTPTIYQNANVVQQQLLPPPPPPLPPSQQQQQQQQHFSAQQQQQQQQQYHQQQQQQQQQQQQHGPSSTVLLSQLVNSTFLHANHSSCSNSKSTRLDAASHHQHQHQPHQPQQQQQQQQQLLQQQQHHHNSSNSSNSSSAAGSDPLNPHHHHAHHHGHPHGQLLHAAHHLHHGADSNSSSANSTPNSTAQLAASIASTLNGNKSLLQAAAAANVAAVAAVAEDNNNSLTPNANAAVAAAAMAAHAQHAAALGAPSFLPNLPSLPAFQFAAAAAAGQDPRAQHFRFADAELQMQPGVSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDSAVMLLKSLIPKKDSGLPQYAGRGAGGDDSMSEDRLAHILSEASSLMKSSAVAAQQQEHQRRHVVDDTHSNEDSKSPPQSCSSPFYKDQQIKHLQPQQQQQLQHATEHAQREQREAAAAVVAVHQQQQQQQREQREQREAAQREQQQRIRHDELGPDKMARLYQELMTRTPREAAFPSFLLTPFFGGAAGMPGATANPFPTAMAADENMRHVLEREIAKLQQQQAQQVQQAASFPNFSSLMALQQQVLNGAQDLSLANKDIKLNGQRSSLDQHSGGSSSCSKDGERGDDNDRSYPSLSHAARKSEGGNTPAPPAPSLTQTSAGSGSNSNAANSTVASGHGSNSAAPSPLSNSILPPALSNQGEEFAATASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLANKMQATLPMQKMMNELKLQEPAQAQHIMQQMQAAAAMSAAMQQQQQAAAAQAAAVQQAQAQAQAQASQHQQAQHQQQQHQQVHQHQQAQQQAQAQAQAQAQAQLLHHQNMLLTSPGLPPQHAISLPAAVTPSGIQSGAGNPTAAGSTPGSNEKKPMMMPVLGGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDELELDASGHNMSDNESIEGGSHEPEHTPITEYEKALQKSALASAAAAAAYMSNAARSSRRKPAAPQWVNPAGASTPTAAGVAASNAGVDIGGSSSSSERIINGVCVMQGSDYNRDESDSIKGGGGGGDSNAADAEHDDHAQLEIEQRFMEPEVRIKQEEDDEDEQAQQLQQLQQQQQQKQQLDDATPLDSDAEKQLNVINEEKLRLVRVRRLSSNGDADEHCAAAQQATTAGAAASPAATSWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00543530;
90% Identity
iTF_00494897;
80% Identity
iTF_00513356;