Basic Information

Insect: Drosophila formosana
Gene Symbol: L
Assembly: GCA_035045625.1
Location: JAWNOW010000476.1:4909100-4918180[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.1e-05 0.00073 19.8 2.9 1 23 178 200 178 200 0.98

2 17 0.39 25 5.5 6.2 1 23 206 228 206 228 0.97

3 17 1.9e-07 1.2e-05 25.4 3.2 1 23 234 256 234 256 0.99

4 17 1.4e-05 0.00089 19.5 0.4 1 23 262 284 262 284 0.99

5 17 0.7 46 4.7 0.1 2 23 372 396 371 396 0.83

6 17 0.088 5.7 7.6 0.3 2 23 421 443 420 443 0.94

7 17 0.03 2 9.0 0.7 1 23 529 551 529 551 0.97

8 17 0.0057 0.37 11.3 0.1 2 23 559 580 558 580 0.91

9 17 0.00011 0.0073 16.7 0.1 1 23 588 613 588 613 0.91

10 17 5.7 3.7e+02 1.9 1.6 2 23 649 671 648 671 0.95

11 17 0.0028 0.18 12.3 1.1 1 23 729 752 729 752 0.97

12 17 0.0018 0.12 12.9 1.8 2 23 938 960 937 960 0.96

13 17 0.13 8.2 7.1 0.1 1 23 966 988 966 988 0.92

14 17 2.5 1.6e+02 3.0 1.7 2 23 996 1017 996 1017 0.93

15 17 0.82 53 4.5 0.5 2 23 1120 1141 1120 1141 0.94

16 17 0.035 2.3 8.8 0.0 1 23 1151 1173 1151 1173 0.96

17 17 0.00024 0.016 15.6 1.2 1 23 1178 1200 1178 1200 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.1e-05	0.00073	19.8	2.9	1	23	178	200	178	200	0.98
2	17	0.39	25	5.5	6.2	1	23	206	228	206	228	0.97
3	17	1.9e-07	1.2e-05	25.4	3.2	1	23	234	256	234	256	0.99
4	17	1.4e-05	0.00089	19.5	0.4	1	23	262	284	262	284	0.99
5	17	0.7	46	4.7	0.1	2	23	372	396	371	396	0.83
6	17	0.088	5.7	7.6	0.3	2	23	421	443	420	443	0.94
7	17	0.03	2	9.0	0.7	1	23	529	551	529	551	0.97
8	17	0.0057	0.37	11.3	0.1	2	23	559	580	558	580	0.91
9	17	0.00011	0.0073	16.7	0.1	1	23	588	613	588	613	0.91
10	17	5.7	3.7e+02	1.9	1.6	2	23	649	671	648	671	0.95
11	17	0.0028	0.18	12.3	1.1	1	23	729	752	729	752	0.97
12	17	0.0018	0.12	12.9	1.8	2	23	938	960	937	960	0.96
13	17	0.13	8.2	7.1	0.1	1	23	966	988	966	988	0.92
14	17	2.5	1.6e+02	3.0	1.7	2	23	996	1017	996	1017	0.93
15	17	0.82	53	4.5	0.5	2	23	1120	1141	1120	1141	0.94
16	17	0.035	2.3	8.8	0.0	1	23	1151	1173	1151	1173	0.96
17	17	0.00024	0.016	15.6	1.2	1	23	1178	1200	1178	1200	0.97

Sequence Information

Coding Sequence: ATGATGGccttaaaaatgttatatcgCGGTCCCAGTTCGCGTTTGgagaatttaattgaaaagatTCAAGCCACGAAGGAGATATCCAATAACGACATGTACAGCACGCACACCTCCTCCAGCTATTCGCCCAGCATCTCGGACGGCACTTTGACGCCCAACTCCCAGCAGCCGCATCCGCAGCTGTTGGCGGCTGGCGAGGATCCGGGCTCCGAGCAGTCCAAGGCGAATGGCGACGCCTCGACAGCAGCCGACGAGGACCGAGAGCCGCAaagggagcgggagcgggatcCACCCAAGCTGAAGCGACCCGCCCACTtgcatcatcaccatcatcattaCCATCACCAGCAGGCGCTGAAAATTGCCAACAAGTTGCGTAAAATCAATAAGGAAGCAAAGCTCACAGGACCCGCAACAGGAGgcggagcaggagcaggagggGGAGGCGGAGGTGGCAGCACTGGCGCAGCAGCCGCAAAGTTTGATAAGTTGACAGGCGAAGGCATTAAGAGCCGAGGCGACGGCTCCTATCAGTGTCAGTTCTGCGACAAATCATTTCCACGACTCGGCTACTTGAAGCATCACGTCCAGAGCCACGCCGAGCATTTGCCTTTCAAGTGCGAGTACTGCGCCAAGTTATTCAAGCACAAGCGCTCCCGCGATCGCCACAAGAAGCTCCACACCAACGAGAGGAACTACAAGTGTCCGCATTGCGAAGCCGCTTTCTCCAGAAGCGACCATCTGAAGATCCACATGAAGACGCACGACATCCAGAAGCCGTTCCAGTGCAGCATGTGCAACCGGGGCTACAACACCGCCGCCGCGCTCACCTCGCACATGCAGAAGCACAAGAAGAACGCGGCCATCCTGGCGGCCGGCGGCAACCCCAACGCCCTCAACTACAGTCCGCGCAGCACCGGCTCCGCCTCCGCTTCGGCCTCGCTCTccagccacagcaacggcagtCTGCACAAGCGGCGCTATGCGCTGGCGCTCGCCTCCGACAGCAGCCCAAGTCGCCTGGAGTACCCGAAGCGCAGTCGAGGACACCACGTGCCcaccacgcccacgcccacgcccacagGCACGCCCATGGGCACGCCGCTGCTGCGGTGCAGCTACTGCCCCAAGGCGGTCGAGTTCGGCAGCCTGGAGCAGCTGAACGTGCATCTGCAGCAGGCGCACGACCAGAAGGCGCCAGACGGACAGCCTGAAGCAGGCGAGGATGGCAAGGGGCAGGCGAATGGCTTTCAACTGAGCTGCGAGTACTGCACGATGCGGTTCCTGAACATCGCCGGCCTGTTCCAGCACATGCGCGCCACGCACCTGGACCGGCTGAGCAGTCCCAACTCCTACTACGAGCACTTCAACCGCCTGGCCACAGCGGGCACGTTCAGTCCGCGCCTGGCGCTGGAGCTGCCCAAGATCAAGCCGGATCTGGGCAGCCCGCCGCTGCCGAAGCCGGAGCAAGAGCTGCCCACGGACCTGAGCAGCAACAAGCGGCGCACGGTGACCCCaccaggaggaggaggaggaggaggagcaatCGCTGCCGCTCcagcgccgccgccaccgGGCGTCTTCTTCTGCAACCAGTGCAACGCGGGGCTGCCGGACTTCGAGAGCTTCCGCAACCATCTGAAGACGCACATTGCCGAGGGCATGCAGCTGATCTGTCCGCACTGCGGCCTCAGTCTGCCCGAGCAGAGCGAGTTCGAGCGCCACGTGGTCGCCCACTTCCTCATCGCCGGCTGCGAGTTCAACTGCGGCGCCGCCAGCTGCGGCAAGTCGTTCGCCAAGTCGgacgagctgcagcagcacctCAACAGCGAGCACGTGGTCAGCCTGCTCAAGTGCGCGCTCTGCGCCGAGATCTGCGAGACGCGGATGGCGATGCAGCTGCATCTGGCCTGCGCCCACGGCCAGGAGACGAAGCTGCTGCGCTGCAGCGCCTGCTTGGAGCTCTTCCGCAACGACACCGACTTCCATGTGCACGTGAAGACGCGCCATCAGCTGGCCAGCGGCCACCAGGCTCCGCCGCCGCCCACAGCCCCGCCAGGCCACGGACACGGTCAGGGGCACGGTCAGGGACAGGCGAATCCCCTGCAGTGCATGTTCTGCCGCGCCGTCTGCTCCTCGGAGCTGGAGATGCACTTCCACCTGGCGGCGCACGCCCGCCAGTTCCGCTGCCCCTCCTGTCCCGAGACCTTCCACGTCGAGTTCCTGCTGGACAGGCACATGCAGAGCCAGCACGGCGGCGTCAAGGAGCACAGTCCCGTCAAGGAGACCTCGCCCAGCATGGGCAGCCTCTACGTGAACGCCCTGCTGCCGCCcctggcagctgctgcggccgccgccgccgccgccgcgaccaataacaacagcagcctcCACATCGACTACAACGTGGCCTTCAAGGGCCTCTTCGGCGGAGCCGGCGCTCCCGCGGGAGCCGCAgcgggcggcggcggcaagtTCTACAGCCCGCTGCAGGTGGACACGAGCGGCCTGAAGCCGCAGCAGTCGCCGCACCCCGCGCTCATGTACGGCCTCAGCCAGCGCTACCTCATGGAGATGTACGCCGCCAAGGCGACCTCCCCGGCGGCAGCCAGCGCTCCCGAAGTGCCCGTCCAGCCGCAGCCTCAGTCGCagcctcagtcgcagtcgcagacAGCCGGTGGAGGCAATTCGGGAGTGACGAGCGGCAGCTACAGCTGCGGGATGTGCGAGCGGCAGGATCTGCGCAGCGAGGCGGAGCTGCATTCGCACCGCAAGCTGGCGCACAACCTGAAGACGGGGGTGAGCCTGAGGTGCGCCTACTGCTCGGGCAACTTCAAGTCGCGGgcggagctggagcagcacaTGAAGAGCTGCCACAACTCGAGTGGGAAGCACAAGTGTCTCATCTGCGACGAGATCTTCCCCTCGCCGGCCATTCTCGCCGAGCACAAGCTGCAGCACTCGAAGGTGGGGCAGTCGGGCAAGTGCGCCCACTGCGGCCACCAGCTGGAGCACGTGGCCGCCTTCCGCGCCCACCTCGGCGAGCACGGCGGCGACGGCAACCTGCCCATGGCCTGCATCTGCTGCCGCCAGACGCTGCACTCCGAGTTCGAGCTCAGCCTGCACGCCAAGTTCCACACGAAGTCggccggcggcggcggcgccagTCTTCAGGAGCCGGTCTGCGCCCTCTGCCTGGAGCCACTGCCCGGGGCCGGAGACACCGCCAAGCTGTGCGACAAGTGCTGTCGCAAGCACAACCTCAATctcaatggcaacggcaacggcaagcGGAGCAAGGAGTCCGCCGCTGCTCCGGCGGCCCCTTCAGTTCCCTCCAGCTACCTGGAGAACCGCTGCAACCTCTGCAAGATGATTCTGCCGCACGCCCAGAAGCTGCAGGAGCACCTCGTGGAGCACACGTTCGCCGGCACCGAGCAGCGCGGCTTCAACTGCTACATCTGCTCGGCGGTCTTCACCGCACCCGCGGGCCTTCTCACCCACATCGCCGAGCACGGTGCTCGACCCTACGACTGCAACCTCTGTCCCGAGAAGTTCTACTTCCGCGCCGAGCTGGAGCACCATCAGCGTGCCCACGAGCTGAGGCCAGCTCCAGTGTCAGTTCCAGTTCCTGCTCCGCCAGCGACTCGCGTGCCCAAGCAGGAGGTCCGCAGCTCCTCGGCCTCAGCGTCGGCTTCGGCGAGTTCGCCCCTCGCCCTCAGTCCGAGTCACGTCAAGCAGGAGCTGTACGAGTCCGAGACGGCTCCCTCGCCCCCCGCCACGGAGGCGCCCGTCCAGGACGACGAGGAGTACATCGAGGTGGAGCAGATGCCGCACGAGACCCGCTCCGGAGATCTGTTGGCTGCCTCGCACACCGAAcgctccagcagcagcgcctAA
Protein Sequence: MMALKMLYRGPSSRLENLIEKIQATKEISNNDMYSTHTSSSYSPSISDGTLTPNSQQPHPQLLAAGEDPGSEQSKANGDASTAADEDREPQRERERDPPKLKRPAHLHHHHHHYHHQQALKIANKLRKINKEAKLTGPATGGGAGAGGGGGGGSTGAAAAKFDKLTGEGIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASASASLSSHSNGSLHKRRYALALASDSSPSRLEYPKRSRGHHVPTTPTPTPTGTPMGTPLLRCSYCPKAVEFGSLEQLNVHLQQAHDQKAPDGQPEAGEDGKGQANGFQLSCEYCTMRFLNIAGLFQHMRATHLDRLSSPNSYYEHFNRLATAGTFSPRLALELPKIKPDLGSPPLPKPEQELPTDLSSNKRRTVTPPGGGGGGGAIAAAPAPPPPGVFFCNQCNAGLPDFESFRNHLKTHIAEGMQLICPHCGLSLPEQSEFERHVVAHFLIAGCEFNCGAASCGKSFAKSDELQQHLNSEHVVSLLKCALCAEICETRMAMQLHLACAHGQETKLLRCSACLELFRNDTDFHVHVKTRHQLASGHQAPPPPTAPPGHGHGQGHGQGQANPLQCMFCRAVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGVKEHSPVKETSPSMGSLYVNALLPPLAAAAAAAAAAATNNNSSLHIDYNVAFKGLFGGAGAPAGAAAGGGGKFYSPLQVDTSGLKPQQSPHPALMYGLSQRYLMEMYAAKATSPAAASAPEVPVQPQPQSQPQSQSQTAGGGNSGVTSGSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNFKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGHQLEHVAAFRAHLGEHGGDGNLPMACICCRQTLHSEFELSLHAKFHTKSAGGGGASLQEPVCALCLEPLPGAGDTAKLCDKCCRKHNLNLNGNGNGKRSKESAAAPAAPSVPSSYLENRCNLCKMILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPAGLLTHIAEHGARPYDCNLCPEKFYFRAELEHHQRAHELRPAPVSVPVPAPPATRVPKQEVRSSSASASASASSPLALSPSHVKQELYESETAPSPPATEAPVQDDEEYIEVEQMPHETRSGDLLAASHTERSSSSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00507081;
90% Identity: iTF_00614412;
80% Identity: -