Dfor005055.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila formosana
Gene Symbol
MBD-R2
Assembly
GCA_035045625.1
Location
JAWNOW010000272.1:2325442-2329307[+]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.5e-23 1.9e-19 69.0 0.1 4 76 443 513 440 514 0.93

Sequence Information

Coding Sequence
ATGGGACGACGGTGCTGCGTAGCAGACTGTCCGTCGACGTCGCGGCTGTTGCAGCACCACGGCGTCACCTACCACTCGTTTCCCATGGACGCCGTCATTCGCGCCATTTGGATAAAGAATTCGCGCATCAGCCTCGATCGGCAGATAACAAAGAGCGTGCTGGTTTGTTCGCGGCACTTCCGACGCCTGGACTTTAATACCATACGCAATGGCAAGTATATGCTGAAGCCTCGGGTGTTTCCCACTGTCTTTCCGTGGGGCAAAATGGAACCTGCCGAGATTGAGGCCGATCATCGGGCGCTGCAACAGGCGTCCGTTGAGGGCTCTGGTGCTAACGGCTCGGCCAACAATTCCACCAGTGAGGAGGTGATCAAGGCCACGGTTGATCAGATTGTGTCGCAAATCTTGGAGGAGACGGCAGAGCGCAAAGCAGCAGAAACTACCAAAACGGATGTGGCTAAGTCAGAGGACACAGAGTCGGTTAAGGAAGCAGCTGAAGATGATGCCGCAAAGACGACGCCAGCGGAAGATGCTGTTGATGATACCTTGGCTGAGGCTGCTCAGGCTTCAGTGGATGCCGCTGATGACCTGCGCGCCACAGCCAACAGCTCAGCGTCGCCCGTGTCGAACTCTCCGCCCAAGTATAGATCGCCCACAAACCTGACCATTGGCGCACGCCTCGAGGCATTGAGCGTAGACAGCGCCTGGCTGCCAGCGCGTATCGTTGAGGTCAATCAAGCAGAGCAGACTCTGCTCATACGCTTCGAGCGCAACAGCAAGCTGAAGACAACGCCCTCGACGACGGGCGGCTACCAAGAGTGGATTGGCTTCAAGTCTGAGCGTTTGCGGCAGCGCATCAGCTCGCGAGTACTGCCCGTGTTCGATCTGGAGGAGAAATGCATGGCGCGCTGGTCGGGACCACGCAAGTTTCCGGGCACCATCAAGAAACTGCTGGGCAACGACACCTACGAGGTGCTCTTCGATGATGGCTACACCAAGAATGTGCGTGCCTTGCACATGGTCAAGCTGCCGCGCCAATTGTCGGCCGCAAGCGACGCTGCTCCCGCTGAAGTGGAAAGCCCAAGTTCACAGGCAGCTGCTACTGCACTTAAGCGGCCAAGCTCTggagcaacaagcagcaacaagaagagCAAAACGGTACCCCAACGCAAAGATTGGCCACTTCTGGACATGTCAAATTTGGACTTGGTTGGTTTGGGTCTGCCGGACATTCCACACGATGGCGAGTGGACTTGCCACTGGGTGAACGATCAACCCATTGGCACCGAAGGCTTTCTGATTGTGGGCGAGCATCAGAAGCCCACGGTGATCGTGCACGACTGGCGTCTACCACCGGGCTGGATCAAGCACATGTATCAACGCTCCAATGTGCTCGGCAAATGGGATGTTATCTTAGTGTCGCCCAGCGGTAAACGCTTTCGCTCCAAGTCGGATCTGAAGACGTTTCTGGAGTCACAAGGTCTGGTCTACAACCCAGACATCTATGACTTTAGCATTCATCGGCGACGTGCCAAGGATATCAATGCTTATGTGTACACGCATGACTATAGTCCACAGCAGCCGGCTAAGCCGAAGCTGCAGGATATCTCGCTCGAGAGCACAACCACATCACAGGATCTGAGCAGTAGCAAGCTGTCGACTGCCACGCCCGCAACCACGCCGATATCTGCGGTCGCCACGCGTcgcacagcagcagaagaTAGCCAATACATGGAGACCCCAGTGGCATCTTTGGTGCCGCCCGCTGAGTTAATGTCGCCTTCGCTGCAGTCTAAGAGCACTGATGTGGTTGGCTCGCCTACTGACGGGGCTGCATCTAGCCCAGGGTCGGGCTTGGATGCGCAGAGCGCTGTACTGGTCGAAGATGGTTATGCTTTCATTGGCGGTCTCAAGGTCCAGATAACGGACAACTTATTCGTGTGCCCGCGTGAGGGATGCGGTAAAACCTATCGCAAGGAAGACTTTCTTCAAATCCACATTCGACATTATCACAAGGAGTTTGCTGAACATGTCAGTCATTGCCCCAAAATGCAGGAGCTGGCTGTCAAGCGTACGCATCCCTCTTCGATAGAGCCAGGTGATCAGACCCCGAAGAACCAAATACCAAATCAACAGTTCTTTGCCAAGCTGCACCAGCAGGATTTGCAGCACACTCGTGGCGCCAAACGGCAACCGGCGGGCACAGATTCATCGCCCACGGCTCTAGAAGCATCACCAATTGTATCGCCCATCAAACCGGTGTCCTCCCCCAAAGCAGAGACGCCAATCGCCTTGAAAGCAAGTCCCCAAACAGCTGCTGGCGTTTCAGAACCTACGCCAACTGCTTTGCCAACCACCAGCGAATCTGCGGCACCCATTCCGATCGAACCTACTAAAATGAGCCCAGCTGATGTCACGCCGTTGGCGTCGAATCGATCCTCAAAACGTACTCGACCTTCATCTAGCAGACGTCAGTCTGGCTCGCGTAAAAGCAGTCGTCAACGAACTCAGCGTCGTCCGGTCAATGTGTCGGCCAACAAGAGTCCTGTAGCAAGTAAACTGCCTATGTCTGGCCTCGATAGCGAGGAATCACGCACGTTGATCCATACGCCAGTGCCAGAGGTTCGCAATGAAGCCAAGAAGCGTCGTATTGGTGCCACGCCGGTTGGCTCACCGGCCATTCTTGATGCTGTATCGACGCCATCGCCCCATGACCAGATTGATATAAATGCGGCACTAGCTCCACCACCACCGCAACCCAATCAGACGCCACAGTACATCAAGGAAAACGGCGAATTGATTCGCATTGTGCGCATGCGGCAGGAAGAAATCATCAACTGCATTTGCGAATATGGCGAAGAGGATGGCCTGATGATACAGTGCGAGCTCTGCTTGTGCTGGCAACACGGCGCCTGCAATGGCATCGTCAAAGAGTCTGATGTGCCGGAGAAGTACGTGTGCTATATTTGCCGCAATCCACAGCGTGTGCGAGACTCGATGCGCTTTAAGCATGATCAGGATTGGCTTTTCGAAGGCAAGCTGGCTGTGGctggatatcacacccccaaTCCACAGGCCACCAAAAAATGCGAGCTGTTGAAGCGCTCTCACACACTGACCGGCAATCTGTTGGACGCTAAGCGTTCCATGCACTCGTTGCAGGTGAAGATTAATATTGCTCGAAATCGCTGTCACCCCAAACTATACCTGTGGGCCAAGAAGTGGGATGAGGATCAGACGGACAACTCGGCCACGCCAGTCAAGCGTCCAAAGACGGAACCATCCGAATGGCCGCCAGCGCCGCAACCGGAGGCAGCCATCGATCCTGAAGAATGTCAATACCGCTTAATTGAACATGTCAAAGTGCAACAATCGCTTTTGCTGAATCGCTTGAATGACATCGAAGGGGAAATGGATGAACTGGAAAGGGAAGATAATCTGATCGATTATAAGGATGCAAGTATGTCCGCAACTAAAGATGCGCTCGCCACGTTCATCAAGGAATTGGAGACCTTAAAACGGCTGGCTAAACTGAACAAGGTTGTAAACATGAAAAACGCACAGAAGGAACAAGAAACGACTACCGAAAATCCTCAGCTGTAA
Protein Sequence
MGRRCCVADCPSTSRLLQHHGVTYHSFPMDAVIRAIWIKNSRISLDRQITKSVLVCSRHFRRLDFNTIRNGKYMLKPRVFPTVFPWGKMEPAEIEADHRALQQASVEGSGANGSANNSTSEEVIKATVDQIVSQILEETAERKAAETTKTDVAKSEDTESVKEAAEDDAAKTTPAEDAVDDTLAEAAQASVDAADDLRATANSSASPVSNSPPKYRSPTNLTIGARLEALSVDSAWLPARIVEVNQAEQTLLIRFERNSKLKTTPSTTGGYQEWIGFKSERLRQRISSRVLPVFDLEEKCMARWSGPRKFPGTIKKLLGNDTYEVLFDDGYTKNVRALHMVKLPRQLSAASDAAPAEVESPSSQAAATALKRPSSGATSSNKKSKTVPQRKDWPLLDMSNLDLVGLGLPDIPHDGEWTCHWVNDQPIGTEGFLIVGEHQKPTVIVHDWRLPPGWIKHMYQRSNVLGKWDVILVSPSGKRFRSKSDLKTFLESQGLVYNPDIYDFSIHRRRAKDINAYVYTHDYSPQQPAKPKLQDISLESTTTSQDLSSSKLSTATPATTPISAVATRRTAAEDSQYMETPVASLVPPAELMSPSLQSKSTDVVGSPTDGAASSPGSGLDAQSAVLVEDGYAFIGGLKVQITDNLFVCPREGCGKTYRKEDFLQIHIRHYHKEFAEHVSHCPKMQELAVKRTHPSSIEPGDQTPKNQIPNQQFFAKLHQQDLQHTRGAKRQPAGTDSSPTALEASPIVSPIKPVSSPKAETPIALKASPQTAAGVSEPTPTALPTTSESAAPIPIEPTKMSPADVTPLASNRSSKRTRPSSSRRQSGSRKSSRQRTQRRPVNVSANKSPVASKLPMSGLDSEESRTLIHTPVPEVRNEAKKRRIGATPVGSPAILDAVSTPSPHDQIDINAALAPPPPQPNQTPQYIKENGELIRIVRMRQEEIINCICEYGEEDGLMIQCELCLCWQHGACNGIVKESDVPEKYVCYICRNPQRVRDSMRFKHDQDWLFEGKLAVAGYHTPNPQATKKCELLKRSHTLTGNLLDAKRSMHSLQVKINIARNRCHPKLYLWAKKWDEDQTDNSATPVKRPKTEPSEWPPAPQPEAAIDPEECQYRLIEHVKVQQSLLLNRLNDIEGEMDELEREDNLIDYKDASMSATKDALATFIKELETLKRLAKLNKVVNMKNAQKEQETTTENPQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00553762;
90% Identity
iTF_00614181; iTF_00509134; iTF_00614223; iTF_00520624; iTF_00520667;
80% Identity
iTF_00509134;