Dfic008643.1
Basic Information
- Insect
- Drosophila ficusphila
- Gene Symbol
- -
- Assembly
- GCA_018152265.1
- Location
- JAECXK010000775.1:20101873-20105345[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00025 0.018 15.3 0.9 2 23 175 197 175 197 0.96 2 16 0.0082 0.58 10.6 2.5 1 23 212 235 212 235 0.94 3 16 0.0034 0.24 11.8 3.9 1 23 306 329 306 329 0.96 4 16 0.0041 0.29 11.5 0.8 2 23 384 405 383 405 0.96 5 16 3 2.2e+02 2.5 1.1 1 20 520 539 520 541 0.83 6 16 0.017 1.2 9.6 0.6 1 23 550 572 550 572 0.94 7 16 0.00022 0.016 15.5 0.7 1 23 579 602 579 602 0.96 8 16 0.0003 0.021 15.1 0.4 2 23 611 632 610 632 0.96 9 16 0.00064 0.045 14.1 0.1 2 22 659 679 658 682 0.90 10 16 0.00092 0.065 13.6 1.3 1 23 716 739 716 739 0.96 11 16 1.5 1.1e+02 3.5 1.5 1 22 746 767 746 767 0.95 12 16 0.039 2.8 8.4 0.1 1 23 776 799 776 799 0.96 13 16 2.4e-06 0.00017 21.7 0.5 1 23 820 843 820 843 0.97 14 16 0.032 2.3 8.7 0.2 1 23 853 875 853 875 0.94 15 16 5.4e-05 0.0039 17.4 3.7 1 23 881 903 881 903 0.99 16 16 1.7e-05 0.0012 19.0 1.5 1 23 909 931 909 931 0.97
Sequence Information
- Coding Sequence
- ATGACCCGCACTTGCAGAATCTGTGGCGGCGACAACGGTCGCTACTGGATTGAGACGCCTGTCGAGAAATATGCAGAGAAGACCTTCGGACAGCTGCTGCTCGAGCTGACCAGAATAGAGGTAGCGATGGCGCAGGCGGAGAAGTTTCCCCAGTGGCTGTGCTCCGCGTGTGCCGAGAAACTGGAGAGCACCTACGACTTTGTGCTGCAGGCGCGGCAGACGCACGAACTCTGGCTGCAAAAACTTGGCGACTTTGCGGGCGGCGATGAGGAGGTCTCTGGGGCCTTAGAGTGCCTCCGCGAGACACCCATCCACCTGTTTGAAATAGAAGGCGTGACCATAAAGACCGAGGAACTGGCTTCCTCGCACCGAGTGGCCAAGGCCGATCCTCTGGTGCGGACACGCTTTGTTAAGCGCAGCATAGTCCACTTCAGCGACTCGGATGACGACCAGGACGATGTACCACTGCGACAGCGCAAGAATACTTCTTCCCTCTCCGCCTCTGAACCAGCGAAAGAGAATGTTTGCGAGCTGTGCAACAAAGCATTCAGATATGTCACCAATCTGTATCGGCACAAGCAGCGGGATCATGGCATTGCCGGGAAAAACGGAGAGGACTATGATGATAACTACTACAAGTGCGACCAGTGCGAGAAGACCTACAAGTACGTGATGGCGCTGGTTAAGCACAAACACAACGAGCATGGCGCCAGTCTACTGCCCACTAAGATGTCCAGAAGAAAGTTACCCGGAAGGCCCTCGGCGTTGCCCGAGGAGGCCAACCCTTCTAGTCCAGCTTCCACCTCCTGCACCTCCATACACCGAAGCAGGACTAACAATGACTCTCTGGTTCACAGCATCATCAAAGCAGTGGAGCTTTCGGATGAGGACGGCACCAGCAGCGTGGACAACTACTACAAGTGTGATCAGTGCAGCAAAACCTACAAGTATATTGTGAGCTTAATCAAGCACAAGCACAAGGAGCACTCCGACAAACAGTCTGATAAGCAATCGGAGTCGGACGATGATCAGCCACTGCCCTCCACTTCCGCCGCGGCACTTCCCTCAGCCGCCAAGCCCTCGAGGATCAACCGTCGGGTCGAGGGTTTCGACCACCATCGATGCGAACCGAATGGTGCCAAGGAAATCAAGTGTATGATCTGCTTGCGAAGGTTCACCAAACTGCGTGAACTTAGGGACCATCTGCAGGATCATCCCACTGACTTCGATTTCGAGGCGCACGGCGAGCCCATCGAGCGCATTGCAGAGGGATTTTTCAAAACAGCCGTGGAATCCACGTCGGAGGGTTTGAAGAGGCGAATTTTTCGAGATCTCAGAATGGGCGTTTATGGACGCTACTATTCAATTACGAATCAAGCTCGCTACGAGATGTCCCTGGACAGTTCGGATACGGACAGTGAAGGCGATGGAAATGCGGACGTTGTCATCCGTCGAAGCTACTCCTGCGAACTCTGCGATTCCCCAGAGGCCAGGTGGCCCCGAAAGTACCTACTGCACCAGCACCACCGGATGGAGCATAGCTGGACAGATGCTCCTCACGTCTGCCAGCGCTGCGACTCGAGGTTCCTCAGTGCCCAGCTGCTAGAACACCACACCAGCCAACTGTGCCAAAACACTCTGAAGCGCTTCATGTGCGACAAGTGTCCTCAGCGTTTCTTTTGGCGCCGGAACCTGCGCGCCCATCTCGTCGAGCACAAGAGCAAGCAAGAGACTTACCCATGCGATCAGTGCTCCCGGAGTTTCCAAGACAAGAGCGCCGTGACCAAGCACAAGCTGATGATGCACCGGGATAGCAACATGCAGCTCCTTCCCTGCCGCTGGTGCACCCGCACCTTCTACCGCCCAGCCTTGTTATACAAGCACGTGCAACGACATGGATTTACTGGCCAGGATCTGCCACTGGCTGAAACCCTGTTGGCGGATGCTTCTAAACCGGCGGGTCCAAAAAGCATTCAGTGCAAGATGTGTGATATCCAGTTTATTAGCGTGGCGGACTTGCGACGGCACATTTCAATGCAGGGCCACAGTAACGAGCCGTCGGCCTACATGATTAGCACTGCCACTGGTTTTGAGCTTCTGCTGGACGATACGGACGACAGTGATGAGGAAGGTAGCGGTCGGTCGTACACCTGCGATCTGTGTGATATGAACTTCCGGCGCCGACGGGAGATGAGTGAACACCAGTACTCGCTTCACAGCTTCGACAAGTTGCCTCACTCCTGCGAGCACTGCATTTTCAAGACGGTGGATAAATTCATGCTGGCTCAGCACCTGCGCACTCAGTGTCTGAACAGCGAGAAGAAGTTTGTCTGCGCTCGCTGTGGCTACAAGTTCATGTGGGAGGAGAATCTGGCCCAGCACCTGGCCACCCAGCATCCCAAGCAACCCGCCGTTCCTGAGCAGCAACCTTCGGTGAGGAGAAAGCGACGGTTCCGCTATCAGTGTCCCCACTGCTGGCGTTCCTTCGTCGTTCAACCCAGCCTGGAGAAGCACATCCGGGATATGCATGTGGCGAAAAAGAACCCAGGAAAGAAGTATCTCTGCTCTCTCTGCGGCCTGGAGTCGCTTACGCCAAATAAGCTGAACATCCACATGCGACGCCACATGGGCGAGAAGCCCTTCAAATGCGATCTCTGCGACATGCGCTTCACGGTCCACTACGAGCTGAAGGTCCACCGAAGGAAGCACACCGGCGAGCGGCCCTACCAATGCACCTTCTGCTCCAAGGACTTTGCTCGACCGGATAAACTCCGGCGACACGTTTTCATGCACAACGTTAAGTCGTGA
- Protein Sequence
- MTRTCRICGGDNGRYWIETPVEKYAEKTFGQLLLELTRIEVAMAQAEKFPQWLCSACAEKLESTYDFVLQARQTHELWLQKLGDFAGGDEEVSGALECLRETPIHLFEIEGVTIKTEELASSHRVAKADPLVRTRFVKRSIVHFSDSDDDQDDVPLRQRKNTSSLSASEPAKENVCELCNKAFRYVTNLYRHKQRDHGIAGKNGEDYDDNYYKCDQCEKTYKYVMALVKHKHNEHGASLLPTKMSRRKLPGRPSALPEEANPSSPASTSCTSIHRSRTNNDSLVHSIIKAVELSDEDGTSSVDNYYKCDQCSKTYKYIVSLIKHKHKEHSDKQSDKQSESDDDQPLPSTSAAALPSAAKPSRINRRVEGFDHHRCEPNGAKEIKCMICLRRFTKLRELRDHLQDHPTDFDFEAHGEPIERIAEGFFKTAVESTSEGLKRRIFRDLRMGVYGRYYSITNQARYEMSLDSSDTDSEGDGNADVVIRRSYSCELCDSPEARWPRKYLLHQHHRMEHSWTDAPHVCQRCDSRFLSAQLLEHHTSQLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKSKQETYPCDQCSRSFQDKSAVTKHKLMMHRDSNMQLLPCRWCTRTFYRPALLYKHVQRHGFTGQDLPLAETLLADASKPAGPKSIQCKMCDIQFISVADLRRHISMQGHSNEPSAYMISTATGFELLLDDTDDSDEEGSGRSYTCDLCDMNFRRRREMSEHQYSLHSFDKLPHSCEHCIFKTVDKFMLAQHLRTQCLNSEKKFVCARCGYKFMWEENLAQHLATQHPKQPAVPEQQPSVRRKRRFRYQCPHCWRSFVVQPSLEKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHMGEKPFKCDLCDMRFTVHYELKVHRRKHTGERPYQCTFCSKDFARPDKLRRHVFMHNVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00548234;
- 90% Identity
- iTF_00536949;
- 80% Identity
- -