Dere008574.1
Basic Information
- Insect
- Drosophila erecta
- Gene Symbol
- -
- Assembly
- GCA_000005135.1
- Location
- CH954179.1:19255471-19263418[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.8e-10 9.5e-07 28.5 0.0 7 40 630 664 629 667 0.87 2 4 7.8e-14 1.1e-10 41.1 0.1 2 39 679 716 678 719 0.94 3 4 1.8e-17 2.6e-14 52.7 0.0 1 45 733 778 733 778 0.98 4 4 1.8e-19 2.6e-16 59.1 0.0 1 43 785 828 785 829 0.97
Sequence Information
- Coding Sequence
- ATGGGACTGTACTCAATGTCGAACGGCGTGAAGGGGCTTAAGATGTCCAGATTGTTGATGAATTTGGGGGGTGGACGGGGGAAGCCCTTGAAGAAGGGCCTCTTGCGCACCGCCGAGCAGCTAAAGATCAAGGGACTCTGCGAAACCGCCGAGAACGCGGATGACCTGAACGACGCGGCCACTGCAACGATCACGGTTTCAGAGAACATACAGCAGGCGGTCGTTGGCAATATAGTGAACGCCACCATAGTACCCGGTGCCCCGTCGCCCTCTATGCAACATCAACATGTGcagcagcagcagcagcaacaaatcaACGCTGCCCTGCTTACGCAACACGGAGGAGTGTCCAGCGGAAGTGTTACCCTATCCGGGCAATTGCTGAGCTCCTCggccagcggcagcagcggaagTTTAGCCGGCGGACAGCAGGCTCCACAGACGCCATCCGGTTTGCAGCCAACGCCGCGCAAGTCACGACTAAAGCGCTCCAAATCGCCAGATTTGCCATCgggcggaggagcaggaagCTCGGTTGGAGGCTCGAGTAGCGGCTCATCGCAGCAGCAACCGCAACCGGCGCACCACCATCACCCGCAGACCATTCTCATTCAGGGCCAAAATCCAAACTCCATTGTGAGCCTTCAGCAAACCGCCGACGGCAATTATATACCAGTATCGGGTGCTGGCGACGATTCAGACGCCGAGGACCACGACCACGACCACGAGCACGAGCACAATCACGGACACGGGCACGGAGGACATTCGCACGGACACGGTCACAGCCACGATCACAGTCACGATCACGATCACGAGCACGATAATAAGCCGAATAAGATCTGCAAAACCGAGCATTCGGTGGCCTCGCCGGCGTCCAATTCATCCAGCGGCTCGAACAATGCAGCGGGCGTGAGCGGCGTGACATCCACCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACCCCAGTCACCGTCACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACACGCGATCTATCAAATCCCACCGAACCACTCGACATAGACAATCATCTGGCTCAGCAGATCCATCGGCTCGATCAGTCCCCCATGCACTCGATATCGCACCACCATACAGGCGATGAGAGCAACTCAAATCTGGTGCAGCATATCAAGAGCGAAGTGATCGAGGCCAAGCACCTGGCCGCTGCCCAGCAGCATGCACTTAACcaggcccagcagcagcatgccCATCACCAggcccaccagcagcaccagcagcatcagcaacagcagcagcagcagcagcatcaacagcagcagcagcagcatcttcaTGCCCAGCAGCTCTTGGCCCAGAgtcagttgcagcagcagcagcaacagcagcagcagcaacaccaccagcagcagcaacaggcagcagccgccgcagcagctggTGTGCATGGCCAGCATGGGGGACATGTGACGCACGCCGACATTGGCGGTGCCACAGTCATGGAGATTGATCCAAGCCAGATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCCGGGCATATGGACATGTATAACTCGGATACGAGTGAGGATTCGATGATGATCGCCAACGGCTCGCCGCACGATCAGAAGGAACCGCACTATACGAATTTGGATCAGCAGCACGGTCTGGGTGGCAGCGTTTGCGGCCCGGGGCCCGGCGGTGCTGGTGGCGGTGGGGGCATGAGTGGTGGGgctggctctggctctggcgAGAAAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTACAGAATGCCTTGGAGGCACTCCGTTCTGGCCAAATATCCGCGAACAAAGCGTCAAAGGCCTTCGGCATCCCATCCTCGACGCTCTACAAGATTGCTCGGCGCGAAGGCATCCGCCTAGCGGCGCCCTTCAATGCCGCCCCGACCACGTGGACGCCCGAGGATCTGGAGCGCGCCTTGGAGGCGATACGGGCGGGTAATACTTCGGTGCAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAACGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACACCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGCTCGCTCTATGGCCGCTTCAAGCGCGGCAAATACGATGTGGTGGCCAACACGAGTGGCGTGGCGCTCTTGAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGttGCATATGTTACAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCACCACAGCTCGGCGCAGCAGGGACCGCCGACGCCGCAGCACATGCAGCAGCACGTGGTGCacatgcaacagcagcagcagcagcagcagcagcaacagcaatcgcCCCATCCGGGCCACCATCCGCAGCATATGCAGCAAGACGTGGTTACATCGAGCAGCCAGGTGGTGCacagccaacagcagcagcagcttcagcaGATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- MGLYSMSNGVKGLKMSRLLMNLGGGRGKPLKKGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPSMQHQHVQQQQQQQINAALLTQHGGVSSGSVTLSGQLLSSSASGSSGSLAGGQQAPQTPSGLQPTPRKSRLKRSKSPDLPSGGGAGSSVGGSSSGSSQQQPQPAHHHHPQTILIQGQNPNSIVSLQQTADGNYIPVSGAGDDSDAEDHDHDHEHEHNHGHGHGGHSHGHGHSHDHSHDHDHEHDNKPNKICKTEHSVASPASNSSSGSNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAQQHALNQAQQQHAHHQAHQQHQQHQQQQQQQQHQQQQQQHLHAQQLLAQSQLQQQQQQQQQQHHQQQQQAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSVCGPGPGGAGGGGGMSGGAGSGSGEKALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSAQQGPPTPQHMQQHVVHMQQQQQQQQQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00578452;
- 80% Identity
- -