Basic Information

Gene Symbol
ct
Assembly
GCA_035042385.1
Location
JAWNLK010000167.1:16223750-16240241[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 8.4e-27 6.9e-23 80.3 0.0 3 71 695 764 693 770 0.94
2 3 5.7e-32 4.7e-28 96.9 0.0 3 77 1178 1253 1176 1255 0.96
3 3 3.4e-31 2.8e-27 94.4 0.0 3 76 1468 1542 1466 1545 0.96

Sequence Information

Coding Sequence
ATGCGTTTGGAGGCACGTTTGGATAAACAACAGATAAATGAGGCACTTGCCGAGGCAACTGCATTGGCTGCCGCTGTTAATGCGGCTGcgacaaacaataataacaacaacaacaacaacaatagcagcagcaacaacaacaacaataacaacaataataatcacagTAGCCAGGgcagcgaaaacaacaacgagtTGAGCGCGGTGTTTAAGTCAACAGATCTAACATCTACCCATCAGCACAATGACGATgaagacgatgatgatgataatgataacgataatgataatgataaccATGCTGAGCTGCGCGATgatgtcgatgatgatgaggaggacACGGATATGGccaacgagcagcagcataCTGCCATTGGCAACAATCGGCACAACGATGATAACGAAAAGGATGAGGACGAGGAGCAGGACGCCGATCTATCcaatgccacagccacagcggACAGCAATGAGCTGAAAATCAAAAAGGAACAGCACAGTCCACTGGATTTGAATGTGCTTAGCCCACATTCGGCGATTGCCACAGCTGCCGCggccgcagcagccgctgcctgCGCCAACGATCCGAACAAATTCCAAGCTTTGCTCCTGGAACGCACCAAAGCGCTGGCCGCCGAGGCTCTGAAGAATGGCGCCAGCGAGACAGCGAATGCAAGCAGTGATGAAATgccgcaacaacaagcagcagacgcagcaacagccgctAATCAAGTAACAGTAGAAGATGATGCAGATgaagatgcagatgcagatgcagacgaagatgaagatgaagatgaagcaCAAgaagcagcaagagcagcagccacatccaaatccaaatcagaAACAATCACAAATGCAACGGAAAAGCCTGAAAATGATGCATTGACCGAGGCCAACTTGCAGCCCAAAATCGAAATCATTGACACAGACGATGCTGATGGGGGGGCACTGGGGGGCACTGAGATTGCCGCTGGCCAAACACTGGAAGAACAGCTGGTTAATAGCTATTGGAGGCGCGGCTTTGAAACatcaacagtagcagcagccgcagcagcagcagcagcaacgacaacagcagcagcaacagcagctgcagcagccactggGAGCAAAACGCCaacaatttatcaaaatgccaatgtggtgcagcagcaactgttgccgccaccgccgccgccgccgctgccgccgccacaacagcagcagcagcagcagcagcacttttctgcacagcaacaacaacaacaacaacaatatcaccaacagcaacaacaacaacagcagcagcaacatggaCCCTCGTCCACAGTGCTACTAAGTCAATTGGTTAACTCAACTTTCTTACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCACACGCCTAGATGCCGCAtcccaccaccaacaccagcagcatcagccacagcagcagcagcagcagcagctgcttcaacagcagcaacatcaccacaacagcagcaatagcagcaacagcagttcaGCAGCCGGCAGCGATCCACTGaatccacatcatcatcatgcgCACCACCATGGCCATCCACATGGACAGCTGTTGCATGCAGCACATCATCTGCATCACGGCGCCGACTCGAACTCATCCAGCGCCAATAGCACACCCAACAGCACCGCCCAGCTGGCGGCCAGCATTGCCAGCACGCTGAATGGCAACAAGTCACTGTTGCAAGCAGCGGCCGCTGCCaatgtggcagctgttgctgccgttgccgaggataacaacaacagcctgACGCCAAATGCGAATGCGGCTGTCGCCGCTGCAGCAATGGCTGCCCATGCACAGCACGCGGCCGCATTGGGTGCACCCAGTTTTCTGCCCAATTTGCCCAGCCTGCCGGCGTTTCAATTTGcggccgccgctgccgctggcCAGGATCCTCGAGCACAGCATTTTCGCTTCGCGGATGCCGAACTGCAAATGCAGCCGGGCGTCTCGATGGCCGGTCGATTGGGTGAATCGCTAATACCCAAAGGTGATCCCATGGAGGCCAAACTGCAGGAGATGCTGCGCTACAACATGGACAAGTATGCGAATCAGGCGCTCGACACACTTCACATCTCGCGACGCGTACGCGAACTGCTCTCCGTGCATAATATCGGGCAGCGGCTGtttgccaaatatatattgggaCTGTCGCAGGGCACCGTCTCCGAGCTGCTGAGCAAGCCAAAGCCCTGGGATAAGCTAACCGAGAAGGGTCGTGACAGTTACCGCAAGATGCACGCCTGGGCCTGTGATGATAGTGCCGTCATGCTCCTCAAGTCCCTCATCCCCAAGAAAGATTCGGGATTGCCACAGTATGCTGGTCGCGGCGCTGGTGGCGATGATTCCATGTCCGAGGATCGCCTTGCACACATACTCAGCGAGGCCTCGTCCCTGATGAAGAGCAGCGCTGTCGCcgcacagcagcaggagcatcAGCGTCGCCATGTCGTCGACGATACGCACAGCAACGAGGATAGCAAATCGCCGCCGCAGAGCTGCAGCTCCCCCTTTTACAAGGACCAGCAGATTAAGCATctacagccgcagcagcagcagcagctgcagcatgcCACCGAGCATGCACAGCGCGAACAGCGCGAAGCGGCCGCCGCCGTTGTTGCCgtacaccagcagcagcagcagcagcagcgggagcaGCGCGAACAGCGCGAGGCCGCTCAgcgtgagcagcagcagcgcattcGTCACGACGAACTGGGACCGGACAAGATGGCGCGTCTCTATCAGGAGCTAATGACGCGCACGCCACGCGAAGCAGCCTTCCCAAGCTTTTTGTTGACGCCGTTCTTTGGCGGAGCCGCTGGCATGCCTGGAGCAACCGCCAATCCATTCCCCACAGCAATGGCCGCCGACGAGAATATGCGTCATGTGCTCGAACGTGAGATAGccaagctgcaacagcagcaggcacagcagGTGCAGCAGGCTGCCAGTTTTCCCAACTTTTCCAGTTTGAtggcactgcagcagcaggtgctgaACGGTGCGCAGGATCTATCGCTGGCCAACAAGGATATCAAGTTAAATGGACAGCGCTCATCGCTCGACCAGCAcagtggcggcagcagcagctgctccaagGATGGCGAACGTGGCGACGATAACGACAGAAGCTATCCATCGCTGTCGCATGCTGCTCGCAAATCGGAGGGCGGCAACACACCAGCACCGCCCGCACCATCACTAACACAGACATCGGcgggcagcggcagcaattcAAATGCAGCCAACTCAACGGTTGCCAGCGGTCATGGCAGCAACTCAGCGGCACCCAGTCCGCTGAGCAACTCAATACTGCCGCCAGCGCTGAGTAATCAGGGAGAGGAGTTTGCGGCGACGGCGAGTCCACTGCAGCGAATGGCATCGATTACCAATTCACTGATTACACAGCCGCCTGTGACGCCGCATCATTCGCAGCCGCAGCGGCCAACGAAGGCGGTGCTGCCACCGATCACACAGCAACAGTTCGATATGTTCAACAATCTGAACACCGAGGACATTGTGAGGCGTGTGAAGGAGGCGCTCTCCCAGTACAGCATCTCGCAGCGTTTATTCGGTGAGTCTGTGTTGGGATTGTCGCAGGGTTCCGTTTCGGATTTGTTGGCACGACCCAAGCCTTGGCATATGCTGACACAAAAGGGTCGCGAGCCATTCATTCGCATGAAGATGTTCCTCGAGGATGACAATGCGGTGCATAAACTGGTCGCCAGCCAGTATAAGATTGCGCCTGAGAAACTGATGCGCACGGGCAGCTACAGCGGCAGCCCCCAGATGCCCCAAGGATTGGCCAATAAAATGCAGGCGACGCTGCCAATGCAAAAGATGATGAACGAGCTGAAGCTGCAGGAGCCGGCGCAGGCGCAACACATCATGCAACAGATGCAAGCAGCCGCCGCAATGTCGGCagcaatgcaacagcaacagcaggcagctgcCGCTCAAGCTGCCGCCGTACAACAGGCGCAGGCACAGGCTCAAGCTCAGGCCAGCCAGCACCAGCAGgcgcagcatcaacagcagcagcatcaacaggtgcatcagcatcagcaggccCAACAGCAGGCGCAGGcgcaggcacaggcacaggcgcAGTTGCTGCATCATCAGAATATGCTGCTGACCTCGCCCGGTTTGCCGCCGCAACACGCAATCAGTTTGCCGGCAGCGGTCACCCCAAGTGGCATCCAATCGGTTGCAGGCAATCCAGCGGTAGCGGGCAGCACTCCGGGCAGCAACGAGAAGAAGCCAATGATGATGCCGGTGCTGGGTGGTGCACATGCACCAAATGCAATGCGCAGTCTGCATCAGCATATGTCGCCCACGGTTTACGAGATGGCCGCACTCACCCAAGATCTGGACACGCACGATATAACAACGAAAATTAAGGAGGCTCTGCTTGCCAACAACATTGGCCAGAAGATCTTTGGCGAGGCGGTGCTGGGTCTGTCGCAGGGCTCCGTCTCGGAGCTGCTCAGCAAACCGAAGCCGTGGCACATGCTCTCGATCAAGGGTCGTGAACCGTTCATTCGCATGCAGCTGTGGCTGAGCGATGCCAACAATGTGGAGCGTCTGCAGCTGCTGAAGAACGAGCGACGGGAGGCGAGCAAGCGGCGACGCAGCACTGGCCCCAACCAGcaggacaacagcagcgataCGTCCAGCAATGATACGAATGATTTCTATACGAGCAGCCCGGGACCGGGCTCTGTCGGTTCATCGGTGGGCGGTGCACCGCCCAGCAAGAAGCAGCGTGTCCTCTTCTCCGAGGAGCAAAAGGAGGCGCTGCGTTTGGCATTTGCGCTGGATCCGTATCCGAATGTCGGCACCATTGAGTTTCTGGCCAACGAGCTGAGCTTAGCGACGCGCACCATCACCAACTGGTTCCACAATCATCGCATGCGGCTCAAGCAGCAGGTACCCCATGGCCAGCCAGGCCAGGACAATCCCATACCCAGTCGCGAGAACACAAATGCAACGCCCTTCGATCCCGTCCAGTTTCGCAtactgctgcagcagcgtctCGTCGAGCTGCACAAGGAACGCATGGGCTTGAGTGGTGCGCCCATTCCCTACCCACCGtatttcgctgctgctgcactgctcGGTCGCAGCCTGGCCGGCATACCGggtgcggcggctgctgccggtgcagcggcagctgctgctgccgcagtgGGTGCCGCCGGCGGCGATGAGCTGCAGGCACTAAATCAGGCATTCAAAGAACAGATGAGCGGCTTGGATTTGTCGATGCCAACGCTGAAGCGCGAGCGCAGCGATGACTATCAGGATGAGCTCGAGCTGGACGCCAGCGGACACAACATGAGCGACAACGAGTCCATCGAGGGTGGCAGCCACGAGCCGGAGCACACACCCATCACCGAATACGAGAAGGCGCTGCAGAAATCGGCGCTCGCTTCGGCTGCGGCCGCTGCTGCATATATGAGCAATGCGGCGCGCAGTTCGCGTCGCAAGCCGGCGGCACCGCAGTGGGTCAATCCGGCGGGTGCCAGCACACCGACAGCGGCTGGCGTCGTCGCGAGCAACGCTGGCGTCgacatcggcagcagcagcagcgagcggaTCATCAACGGTGTCTGCGTCATGCAAGGCTCCGACTACAATCGCGATGAGAGCGACAGCATCAAAGGTGGCGGCGGCGACTCCAATGCTGCCGATGCCGAGCACGACGATCACGCCCAGCTGGAGATTGAGCAGCGTTTCATGGAGCCCGAGGTGCGCATCAAGCAGGAAGAGGACGACGAGGACGAACaagtccagcagcagcaaaagcagcagttaGACGATGCAACGCCTCTCGACAGCGATGCGGAGAAGCAGCTCAACGTGATCAATGAGGAAAAGTTGCGTTTGGTGCGCGTGCGGCGCCTCAGCAGCAATGGCGACGCCGACGAGCACTGCGCTGCTGCACAGCAGGCGACGACAGCCGGTGCGGCAGCGTCGCCGGCAGCAACATCATGGAACTACTAA
Protein Sequence
MRLEARLDKQQINEALAEATALAAAVNAAATNNNNNNNNNNSSSNNNNNNNNNNHSSQGSENNNELSAVFKSTDLTSTHQHNDDEDDDDDNDNDNDNDNHAELRDDVDDDEEDTDMANEQQHTAIGNNRHNDDNEKDEDEEQDADLSNATATADSNELKIKKEQHSPLDLNVLSPHSAIATAAAAAAAAACANDPNKFQALLLERTKALAAEALKNGASETANASSDEMPQQQAADAATAANQVTVEDDADEDADADADEDEDEDEAQEAARAAATSKSKSETITNATEKPENDALTEANLQPKIEIIDTDDADGGALGGTEIAAGQTLEEQLVNSYWRRGFETSTVAAAAAAAAATTTAAATAAAAATGSKTPTIYQNANVVQQQLLPPPPPPPLPPPQQQQQQQQHFSAQQQQQQQQYHQQQQQQQQQQHGPSSTVLLSQLVNSTFLHANHSSCSNSKSTRLDAASHHQHQQHQPQQQQQQQLLQQQQHHHNSSNSSNSSSAAGSDPLNPHHHHAHHHGHPHGQLLHAAHHLHHGADSNSSSANSTPNSTAQLAASIASTLNGNKSLLQAAAAANVAAVAAVAEDNNNSLTPNANAAVAAAAMAAHAQHAAALGAPSFLPNLPSLPAFQFAAAAAAGQDPRAQHFRFADAELQMQPGVSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDSAVMLLKSLIPKKDSGLPQYAGRGAGGDDSMSEDRLAHILSEASSLMKSSAVAAQQQEHQRRHVVDDTHSNEDSKSPPQSCSSPFYKDQQIKHLQPQQQQQLQHATEHAQREQREAAAAVVAVHQQQQQQQREQREQREAAQREQQQRIRHDELGPDKMARLYQELMTRTPREAAFPSFLLTPFFGGAAGMPGATANPFPTAMAADENMRHVLEREIAKLQQQQAQQVQQAASFPNFSSLMALQQQVLNGAQDLSLANKDIKLNGQRSSLDQHSGGSSSCSKDGERGDDNDRSYPSLSHAARKSEGGNTPAPPAPSLTQTSAGSGSNSNAANSTVASGHGSNSAAPSPLSNSILPPALSNQGEEFAATASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLANKMQATLPMQKMMNELKLQEPAQAQHIMQQMQAAAAMSAAMQQQQQAAAAQAAAVQQAQAQAQAQASQHQQAQHQQQQHQQVHQHQQAQQQAQAQAQAQAQLLHHQNMLLTSPGLPPQHAISLPAAVTPSGIQSVAGNPAVAGSTPGSNEKKPMMMPVLGGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDELELDASGHNMSDNESIEGGSHEPEHTPITEYEKALQKSALASAAAAAAYMSNAARSSRRKPAAPQWVNPAGASTPTAAGVVASNAGVDIGSSSSERIINGVCVMQGSDYNRDESDSIKGGGGDSNAADAEHDDHAQLEIEQRFMEPEVRIKQEEDDEDEQVQQQQKQQLDDATPLDSDAEKQLNVINEEKLRLVRVRRLSSNGDADEHCAAAQQATTAGAAASPAATSWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00543530;
90% Identity
iTF_00500094;
80% Identity
iTF_00501701;