Ddem008444.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila demipolita
Gene Symbol
-
Assembly
GCA_035042405.1
Location
JAWNLI010000182.1:8927-12366[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.13 8.9 6.9 0.0 1 13 343 355 343 363 0.81
2 8 0.00039 0.027 14.9 1.8 1 23 702 725 702 725 0.95
3 8 0.0008 0.056 13.9 3.4 1 23 754 776 754 776 0.97
4 8 4.8e-05 0.0034 17.7 6.7 1 23 782 804 782 804 0.97
5 8 3.5e-05 0.0025 18.1 0.9 1 23 810 832 810 832 0.98
6 8 0.00056 0.039 14.3 1.4 1 23 838 860 838 860 0.98
7 8 0.01 0.73 10.4 0.0 2 23 867 888 866 888 0.96
8 8 0.016 1.1 9.8 0.1 3 21 896 914 894 915 0.91

Sequence Information

Coding Sequence
ATGGCGGCTGCAGCTGTTGAGGATGGGCGAGAAAAATGCGGCAGCGTCTACACTTGGAACTGTGCTGGCGAACTCTATGGCATCGAGTGTGAGCTGTGCGAGGAACGACCCCTCTGTGCACTCGATGAGTTTGCCGAGCATATGGAGCTGTGGCACTCCGACTGGCAACAGGCGCCGGAGGATGAGCTCATGCAGGAGGTTCTCGCCGAACAGTCCAGCAGCAACTGCGAGGTCAACGAACTCAAACAGCAGCTGGTTCAAGAGCTTAACTCACTCGATaaacagcaaccacagctGATGGACACATTTCAACTATATGAACAAGTTCAGTTCAATGAGGATagtGGTTTAGCCCGTGTGGAGACGCCAGCGAAGCTGACGACGGAGCATGTACAGCAGCTGATTGAGCTATATCGATCGCATCCGCGACTGTGGGATCAATCGCATCCAGAGTTTCGGGACGTGGAGCAGGGTCGCCAGTCGTGGCGTCAGATATCGGATGCGTGGAGTGCCCACTGCGGACGTGACTTCAGTGTGACCGATGTGCGCATTCGGATCTCTACGCTGTGCCAACGATTCCTCAAGCAGCGCGAACGTATCGATGCCGAGGGTGACCTCGATCTCGAGGAGAGCGCCAAGTTCGTCCATTACGATCAGATGCGTTTCCTGTGTGAGCAGCAGGCGCTGCTTAAGCGCCAGGAGCACTTTGCACGCGAGAACCGCAAACTGCTCGAGATCTACGAGCACTATCCAATACTCTGGCACAATGCCCACAAGAGATTGCGCTGCGCCTCAACGGTGCAGAGGCGCCACGAGGCACATCGTGGCCTCCAGCTGGGGTTGCGCATGAGCGGCATTAATCTGTCCGGATTAGCGATGCAGCGACGACTCCAGTCGCTGAGGAAACGCTATCGCCTGGAGAAGATACGCTATCTGCACAGTGTCGTCGAGGGGAAACAATCCGAGTTTGTGTCCATCTTTGAGCATTATGCTGAAATGGAATTTCTCCACAAGCACATCGATCCCTATGTCTGTGCTGGCTGTGGCAAGATCTTTGAGAACCTGATCGGCCATCAGGCGCATGTGCAGGATAGTTGCGAGGAGCAATCACTGGCTGCTGCCGACTGCAAACAGTTGACCGAATCGGAAGCGACACTGGGCGATCTTATGGTGCAGCTCGAGCAGCACGAAttacagcagcagaagcagcagcaacagcagctggcggTCGGAGTTGaattggagcagctgcagggagtggagcagcaggagcagctggtGGCAGCAGTAATTACAACTGAGCTTTCCACGCCACTGCTGCATAGTCCAgcagaacagcagcaggcggagGAGGAAGAGATTGAGCCACTTCCTAATAAGGAAGATTCGCACGGCAAGGAGTTCTTCACCGAGGATAGCCAGTCGACGGGTGGGCAGCTACGTATGCGCCTCAGCCTGGAGTTAACCAATAAACTGATTGAGCTCTATCAATTGCATCCGAATCTTTGGGATCCCAATCATCTGGACTACCATGCGAGGAAACAACGACGCCTGGCCTGGTACAACATTGCCGCCCAGCTGAACACATTTGCCAGCTGCCCGGATCGCTTCAGCTGGCAGATGCTTCATCGCAAGCTCACCGATTATGTCAAGTACTATCGACGCGAACGCCAGCGGGAGGAACTGGCGGTTGGTGGTGACGGCGAGGGCACCCGTTGGGTCTTCTACGCGGCGTTCAGTTTTATGGACGATGTGGTGCCGATAAATCGTGTGCTGCAGAAATCATTGCAGCAGCGCGACAGCAATCTGAAGATCATCCAGGTTTATCAGAGCTACGAGCAGCTATGGTGCACCACACATCCGGATTATACGAAGCGCAAGCAACGCCTGCGACACCTCGAGTCTCTGTGCACCCGCCTACAGGAGGAGTGCAATCTGCAGATAACCGTTGAGCGTTTGAAGAGTCGTCTTATCGAGTTCCGCTGCCAATATCGTCAGTGCAAAGAGGCGCGCCAGGCGGCGCTCCACCGCAATAATGCCACCTGGCAACCGAGCTACGAGTATTATGCGGCGCTGCAGTTCCTCGAACTACATGTGTCGCCCTTTAACTGTGAACGGTGCACGGCGAGCTTTAAGCGACGCAGCGACTATCTCCGACATCAGAGCAACGTTCACTTGGATCAGCAGCTTAATGAGATGCAGCCCTTTCCGGTCCGGCGTCGCGTGCGACGTGGCACGCATGCCACCAATCCACTGGAGCATATCTGCCACATTTGCGCGATGAAATTCTCGTTGCGCACCAGCCTTCAGGCGCATCTACGTCGCCATCTGGGGCAGCGGACACACTGCTGCACCGACTGCCCTAAGAAGTTCTTCAATTCGACCTCGCTGCGGGTGCATCAGCGCACCCACACCAAGAAGCTGCCGTATGTGTGTGAGCATTGTGCCCGGGGCTTTGTCAATGCCAGTAAACTGAATCAGCACGTCAAGCGGCATACGGAAAAGCGGGATTACCCGTGCACCCGCTGCGACAAGGCCTTCTATACGGCCCACGAGCGAGATCGGCATCTGCGCGCCCATCTCAACATCAGGGACAAGGTGTGTCCGTACTGCAGTCGGGCCTTTGTCGTCGGCAGCGCCTATTATGCCCATCTCAATCTGCATCGGGGCGAGAAGCGGTATGGCTGTGCCGCATGTGGCAAGCGATTCGCTCAGTATGCGGGTCTCTACAAGCATCGCAAGCGCTGCACAATCGCCCAGCTGCAGGAGAAGTGA
Protein Sequence
MAAAAVEDGREKCGSVYTWNCAGELYGIECELCEERPLCALDEFAEHMELWHSDWQQAPEDELMQEVLAEQSSSNCEVNELKQQLVQELNSLDKQQPQLMDTFQLYEQVQFNEDSGLARVETPAKLTTEHVQQLIELYRSHPRLWDQSHPEFRDVEQGRQSWRQISDAWSAHCGRDFSVTDVRIRISTLCQRFLKQRERIDAEGDLDLEESAKFVHYDQMRFLCEQQALLKRQEHFARENRKLLEIYEHYPILWHNAHKRLRCASTVQRRHEAHRGLQLGLRMSGINLSGLAMQRRLQSLRKRYRLEKIRYLHSVVEGKQSEFVSIFEHYAEMEFLHKHIDPYVCAGCGKIFENLIGHQAHVQDSCEEQSLAAADCKQLTESEATLGDLMVQLEQHELQQQKQQQQQLAVGVELEQLQGVEQQEQLVAAVITTELSTPLLHSPAEQQQAEEEEIEPLPNKEDSHGKEFFTEDSQSTGGQLRMRLSLELTNKLIELYQLHPNLWDPNHLDYHARKQRRLAWYNIAAQLNTFASCPDRFSWQMLHRKLTDYVKYYRRERQREELAVGGDGEGTRWVFYAAFSFMDDVVPINRVLQKSLQQRDSNLKIIQVYQSYEQLWCTTHPDYTKRKQRLRHLESLCTRLQEECNLQITVERLKSRLIEFRCQYRQCKEARQAALHRNNATWQPSYEYYAALQFLELHVSPFNCERCTASFKRRSDYLRHQSNVHLDQQLNEMQPFPVRRRVRRGTHATNPLEHICHICAMKFSLRTSLQAHLRRHLGQRTHCCTDCPKKFFNSTSLRVHQRTHTKKLPYVCEHCARGFVNASKLNQHVKRHTEKRDYPCTRCDKAFYTAHERDRHLRAHLNIRDKVCPYCSRAFVVGSAYYAHLNLHRGEKRYGCAACGKRFAQYAGLYKHRKRCTIAQLQEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01322149;
90% Identity
iTF_00500547; iTF_00552561; iTF_00543975; iTF_00535572; iTF_00511541;
80% Identity
-