Dmel001992.1
Basic Information
- Insect
- Drosophila melanosoma
- Gene Symbol
- -
- Assembly
- GCA_035042045.1
- Location
- JAWNLY010000044.1:761836-765264[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.13 8.8 6.9 0.0 1 13 346 358 346 366 0.81 2 8 0.0013 0.092 13.2 1.6 1 23 705 728 705 728 0.94 3 8 0.00081 0.055 13.9 3.4 1 23 757 779 757 779 0.97 4 8 0.0001 0.0069 16.7 6.5 1 23 785 807 785 807 0.97 5 8 3.5e-05 0.0024 18.1 0.9 1 23 813 835 813 835 0.98 6 8 0.00057 0.039 14.3 1.4 1 23 841 863 841 863 0.98 7 8 0.011 0.72 10.3 0.0 2 23 870 891 869 891 0.96 8 8 0.016 1.1 9.8 0.1 3 21 899 917 897 918 0.91
Sequence Information
- Coding Sequence
- ATGGCGGCTACAGCTGTTGAGGATGGGCGAGAAAAATGCGGCAGCGTCTACACTTGGAACTGTGCTGGCGAACTCTATGGCATCGAGTGTGAACTATGCGAGGAACGACCCCTCTGTGCACTCAATGAGTTTGCCGAGCATATGGAGCTGTGGCACTCCGACTGGCAACAGGTGCCGGAGGATGAGCTCATGCAGGAGGTTCTCGCCGAACAGTCCAGCAGCAATTGCGAAATCAACGAACTCAAACAGCAGCTGGTTCAAGAGCTTAACTCACTCGATAACCAGCAACCGCAGCAACCACAGCTGATGGACACATTTCAACTAAATGATCAAGCTCAGTTCAATGAGGATagTGGTTTACCCCGTGTAGAGACGCCAGCAAAGCTGACTACGGAGCATGTGCAGCAACTGATTGAGCTATATCGATCGCATCCGCGACTGTGGGATCAATCGCATCCAGAGTTTCGGGACGTGGAGCAGGGTCGCCAGTCGTGGCGTCAGATATCGGATGCGTGGAGTGCCCACTGCGGACGTGGCTTCAGTGTGACCGATGTGCGCATTCGAATCTCTACGCTGTGCCAGCGATTCCTCAAGCAGCGCGAACGTATCGATGCCGAGGGTGACCTCGATCTCGATGAGGGCGCCAAGTTCGTCCACTACGATCAGATGCGTTTCCTGTGTGAGCAGCAGGCGCTGCTTAAGCGCCAGGAGCACTTTGCACGCGAGAACCGCAAACTGCTCGAGATCTACGAGCACTATCCAATACTCTGGCACAATGCCCACAAGAGATTGCGCTGCGCCTCAACGGTGCAGAGGCGCCACGAGGCACATCGTGGCCTCCAGCTGGGGTTGCGCATGAGCGGCATTAATCTGTCCGGATTAGCGATGCAGCGGCGACTCCAGTCGCTGAGGAAACGCTATCGCCTGGAGAAGATACGCTATCTGCATAGTGTCGTCGAGGGGAAACAATCCGAGTTTGTGTCCATCTTTGAGCATTATGCTGAAATGGAGTTTCTCCACAAGCACATCGATCCCTATGTCTGTGCTGGTTGTGGCAAGATCTTTGAGAACCTGATCGGCCATCAGGCGCATGTGCAGGAAAGTTGCGAGGAGCAATCACTGGCTGCTGCCGACTGCAAACAGTTGACCGAATCGGAAGCGACACTGGGCGATCTTATggtgcagctggagcagcacgaattacagcagcagaagcagcagcaacagcagctggcggTCGAAGTTGAATTGGAGCAACTGCAGAGAgtggagcagcaggagcagctggtggcagcagcaattgcaacagaGCTAGCCACGCCACAGCTGCATAGGCCAgcagaacagcagcaggcgaaGAAGGAGGAGATTGAGCCACTTCCTAATAAGGAAGATTCGCACGGCAAGGAGTCCTTCTCCGAGGATAGCCAGTCGACGGGTGGGCAACTACGTATGCGCCTCAGCCTGGAGCTGACCAATAAACTGATTGAGCTCTATCAATCGCATCCGAACCTTTGGGATCCCAATCATTTGGACTACCATGCGAGGAAACAACGGCGCCAGGCCTGGCACAACATTGCCGCCCAGCTGAACACATTTGCCAGCTGCCCGGATCGCTTCAGCTGGCAGATGCTGCATCGCAAGCTTACCGATTATGTCAAGTACTATCGACGCGAACGCCAGCGGGAGGAGCTGGCGGTTGGAGGTGACGGCGAGGGCACCCGTTGGGTCTTCTACGCGGCGTTCAGTTTTATGGACGATGTGGTGCCGATAAATCGTGTGCTGCAGAAATCATTGCAACAGCGCGACAGCAACCTGAAGATCATCCAGGTTTATCAGAGCTACGAGCAGCTATGGTGCACCACACATCCGGATTATACGAAACGCAAGCAACGCCTGCGACACCTTGAGTCCCTGTGTACCCGCCTACAGGAGGAGTGCAACCTGCAGATAACCGTTGAGCGTTTGAAGAGTCGTCTGATAGAGTTCCGCTGCCAGTATCGTCAGTGCAAGGAGGCCCGCCAGGCGGCGCTTCAGCGCAATAATGCCACCTGGCAACCGAGCTACGAGTATTATACGGCGCTGCAGTTCCTCGAACTGCATGTGTCGCCCTTCAACTGTGAACGGTGCTCAGCGAGCTTTAAGCGACGCAGCGACTATCTCCAACATCAGACCAACGTTCACTTGGATCAGCAGCTTAATGAGATGCAGCCGTTGCACCGTCGGCATCGCGTGCGACGTGGCACGAATGCCACCAATCCACTGGAGCACATCTGCCACATTTGCGCTATGAAATTCTCGTTGCGCACCAGCCTTCAGGCGCATCTACGTCGCCATCTGGGGCAGCGGACACACTGCTGCACCGACTGCCCTAAGAAGTTTTTCAATTCGACATCGCTGCGGGTGCATCAGCGCAGCCACACCAAGGAGCTGCCGTATGTGTGTGAACATTGTGCGCGGGGCTTTGTCAATGCCAGCAAACTGAATCAGCACGTCAAGCGGCATACGGAAAAGCGGGATTACCCGTGCACCCGCTGCGACAAGGCCTTCTATACGGCCCACGAGCGAGATCGGCATCTGCGCGCCCATCTCAACATCAGGGACAAGGTGTGTCCGTACTGCAGTCGGGCCTTTGTCGTCGGCAGCGCCTATTATGCCCATCTCAATCTGCATCGGGGCGAGAAGCGGTATGGCTGTGCTGCATGTGGCAAGCGATTCGCTCAGTATGCGGGTCTCTACAAGCATCGCAAGCGCTGCCCAATCGCCCAGCTGCAGGAGAAGTGA
- Protein Sequence
- MAATAVEDGREKCGSVYTWNCAGELYGIECELCEERPLCALNEFAEHMELWHSDWQQVPEDELMQEVLAEQSSSNCEINELKQQLVQELNSLDNQQPQQPQLMDTFQLNDQAQFNEDSGLPRVETPAKLTTEHVQQLIELYRSHPRLWDQSHPEFRDVEQGRQSWRQISDAWSAHCGRGFSVTDVRIRISTLCQRFLKQRERIDAEGDLDLDEGAKFVHYDQMRFLCEQQALLKRQEHFARENRKLLEIYEHYPILWHNAHKRLRCASTVQRRHEAHRGLQLGLRMSGINLSGLAMQRRLQSLRKRYRLEKIRYLHSVVEGKQSEFVSIFEHYAEMEFLHKHIDPYVCAGCGKIFENLIGHQAHVQESCEEQSLAAADCKQLTESEATLGDLMVQLEQHELQQQKQQQQQLAVEVELEQLQRVEQQEQLVAAAIATELATPQLHRPAEQQQAKKEEIEPLPNKEDSHGKESFSEDSQSTGGQLRMRLSLELTNKLIELYQSHPNLWDPNHLDYHARKQRRQAWHNIAAQLNTFASCPDRFSWQMLHRKLTDYVKYYRRERQREELAVGGDGEGTRWVFYAAFSFMDDVVPINRVLQKSLQQRDSNLKIIQVYQSYEQLWCTTHPDYTKRKQRLRHLESLCTRLQEECNLQITVERLKSRLIEFRCQYRQCKEARQAALQRNNATWQPSYEYYTALQFLELHVSPFNCERCSASFKRRSDYLQHQTNVHLDQQLNEMQPLHRRHRVRRGTNATNPLEHICHICAMKFSLRTSLQAHLRRHLGQRTHCCTDCPKKFFNSTSLRVHQRSHTKELPYVCEHCARGFVNASKLNQHVKRHTEKRDYPCTRCDKAFYTAHERDRHLRAHLNIRDKVCPYCSRAFVVGSAYYAHLNLHRGEKRYGCAACGKRFAQYAGLYKHRKRCPIAQLQEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01322149;
- 90% Identity
- iTF_00499112;
- 80% Identity
- -