Dcra002295.1
Basic Information
- Insect
- Drosophila cracens
- Gene Symbol
- retn
- Assembly
- GCA_035042505.1
- Location
- JAWNLF010000167.1:5694186-5721012[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.4e-26 9.5e-23 80.4 0.0 2 89 331 416 330 416 0.96 2 3 8.6 1.3e+04 -3.3 0.6 53 76 536 562 529 579 0.52 3 3 4.8 7.1e+03 -2.5 0.3 20 40 577 604 554 617 0.53
Sequence Information
- Coding Sequence
- ATGCTCAGCAGTGTAGCCGCACCAATACCCAAACACAGCGAGCACAAACCCGGACCCGTGCCCGTGCCCGTGCTCAAGTCATACCTGGGCTCATGCGAGTATCGCGTATCTCTCCAACTATACAATTCCCACGGTGATCGTACGGATGACGAGATGCGCGACTGTGATTCCGTTGACGGGGAGCATCATCAGCTGAGCGCCAAGGCGGCAATTGCAGCCCGGCTAAGTCACACAGTTGCCGGCGGCGCTGGCCTCAACTTTGCCAGTCCAGAGCAGCAAACAGATCTGCCACTCAGccatcatcatcagctgccGCCGAATCATCCGCTTAACGCCCTCGGCAGCTTTATGAGCATCGGCGGCCTACACAGCATTCCAAATCTGCAGCACAGCGATGTCCTCGAGAAGCTCAAGATGCAAGTGCGCGACATGAAAGTTGGCCTCATGGAGCAGGactatgcagcagcagcacatgcCGCAGCCTTTGGCGCCAACATGCTGCCCACAACGATCAGTACGGCCTTTCCGCTGCCGCACAATTCGGTGGCAGtggctgcggcagctgcatcCTTTGGCCATGCCACAAATGTGAATGCCAATCCCGTGCCGCCAGCCAGCAATGGCGCCAGCTACAATGGTGGGCCCAGTGGTGGACatgcaacaggagcagctgcTAGCATTGGCAACAGTGGAGGCGCAGGAGCAGGAGGTGCTGGAGGCAACAGCAGTGgtgttaacaacaacaacaacaacaacaatagcaacaataacaataacaacaacaatgctggCAATGGTCATCCCTTTTCATTTGCATCGCCAACAGCGCCGAGCAGCACCAAAGAAGCGCGCCACTTTGCAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGATgatttgttttcgtttatgCAAAAGCGAGGCACGCCCATCAACCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTATATGAGCTATATAATCTGGTGATAGCTCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCGGCATTCACCCTGCGCACCCAATACATGAAGTATTTGTACCCCTACGAGTGCGAGAAGAAGAACCTCAGCACTCCCGCCGAACTGCAGGCGGCCATCGATGGCAATCGTCGCGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCCATGCACAGCCAGATGCCACTGACAACAATTTCGCGACCACCGTTGCCTGGGGGCATGCAACAGATGTCGCCACTGGCGCTGGTCACACATGCCGCGGCTGCGAACAATCAGCAAGCGCAGGCagcggccgcagcagcagcagcgcatcgACGGCTGATGGGCGGGCCCGCCTTTGGTCAGATGCCGAATCTGGTGACGCAGGAGATTGAGAATCGCATGATGGAATATCTGCAGCTCATACAGGCgaagaaggagcagcagcagcagcaacagattgCGCCAATTCTGGGCGCCACACATccccaccagcagcagcaacagcagcagcagcaacaatcgctgcatcatcaccaacaacaacaacaacaacagcagcagcagcgacagcgctCACAGAGTCCCGAGCTGAGCACACGCGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGcGAAGCCTTGAACCTTTCCGATTCGCCGCCAACTTTGAATTTGAATCACATAAAACGGGAAAGGGATCGCGATCCGACGCCAGAACCAACGGATCTGGAGGAAACGGCCCATCAGCCGCCACCGGCGAAACGTGTGGGCAGCGGCCTAATGCCGCCCGGATTTCCCGCCAACTTTTACTTGAATCCCCACAATATGGccgctgtggcagcagcagccggttTTCATCACCAGGCCGCcaacaatcatcatcatcagcagcagcaacagtcgcagcagcaggatgCAGCGTCTGAGGGTGAACCAGAGGATGAGTATGGCAATGGGGAGCACAACACCACCGGCAACTCATCGTCGCTGCATGATGACAGTGAGCCACAGCAGCTGAATGGACACCACCtccaccatcatcatcatgaccATCACGATCTGCATCATGATCTTCATCAtgagcatcatcatcatcagaatCATCTGGACAAGTCGGATGACTCGGCCATTGAGAATTCACCCAGCAcatcgacaacgacaacaacaacaacatcatccaCATCCAAAGCGCATCGTCACAGCTCGCCGGTGTccacaaaaaagaagagcagcggcaactgcaacaacagcagcagcaccaccaacaacaagacGCAGTCCTTGTCGTGTGCGAAGGatgcaggcaacaacagcagcaacgccaacaGTTCCAGCGATGTCAAACTGAATCCCCTCGAGACGCTCAGTCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAACGGCACCAATGCTAATGGAGAGCAGCAGTTGATTGTCAATCTCGAGCTAAATGGCATTAAGTACTCGGGTGTGCTGGTGGCAGCCACCCAagcagtggcagttgcagcatCCAAGTTAGAGGCAGGTCAAACTGAGCGGGAGCAGGCAGAgacgccagctgctgctgctgaggagCCAGCAGTGAGGAACAGCAGCATCACTGAGCATGAGCTCAAGCATGAAAACAGCCAGGAACTTGGCCAGAACGAGGCAATTGATGAGGAAACAAcgcaggaacaacaacaacaacagcaacaacaactcacaGATGACATTGTGAATGGAGCGAGTGCTGTTGGGGCGGGAATTGGAGGGGTTGGCGTTGGGGGTGCAAGTCTGCTGAAGGATGCTGTGGTCAGTTCGTAG
- Protein Sequence
- MLSSVAAPIPKHSEHKPGPVPVPVLKSYLGSCEYRVSLQLYNSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMSIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISTAFPLPHNSVAVAAAAASFGHATNVNANPVPPASNGASYNGGPSGGHATGAAASIGNSGGAGAGGAGGNSSGVNNNNNNNNSNNNNNNNNAGNGHPFSFASPTAPSSTKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHSQMPLTTISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQQIAPILGATHPHQQQQQQQQQQSLHHHQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERDRDPTPEPTDLEETAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHQQQQQSQQQDAASEGEPEDEYGNGEHNTTGNSSSLHDDSEPQQLNGHHLHHHHHDHHDLHHDLHHEHHHHQNHLDKSDDSAIENSPSTSTTTTTTTSSTSKAHRHSSPVSTKKKSSGNCNNSSSTTNNKTQSLSCAKDAGNNSSNANSSSDVKLNPLETLSLLSGMQFQVARNGTNANGEQQLIVNLELNGIKYSGVLVAATQAVAVAASKLEAGQTEREQAETPAAAAEEPAVRNSSITEHELKHENSQELGQNEAIDEETTQEQQQQQQQQLTDDIVNGASAVGAGIGGVGVGGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00511055;
- 90% Identity
- iTF_00573828;
- 80% Identity
- -