Dcol005239.1
Basic Information
- Insect
- Drosophila colorata
- Gene Symbol
- -
- Assembly
- GCA_035041545.1
- Location
- JAWNLD010000272.1:1395979-1402039[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 1.8e-08 33.9 0.0 1 40 562 602 562 605 0.90 2 4 6.2e-14 9.8e-11 41.1 0.1 2 39 617 654 616 657 0.94 3 4 1.5e-17 2.3e-14 52.8 0.0 1 45 671 716 671 716 0.98 4 4 1.5e-19 2.3e-16 59.2 0.0 1 43 723 766 723 767 0.97
Sequence Information
- Coding Sequence
- ATGATAAAAATTATAGAGGTTGGTCTGCTGCGCACCGCGGAACAGTTGAAAATCAAGGGCCTCTGCGAGCCGGCTGAGAATGCAGATGATTTAAATGACGCGGCATCGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGCAGCATTGTGAATGCGAACCTAGTGCCCGGCGCGCCCTCGCCCACaatcgagcagcagcagcagcatcaccaccagcagcagcagcagcaacagcagcaggagcaggagcatcagcagcaggtgcaacagcagcagcaattggtGAACAGTGCGCTGCTGACACAGCATACGCTTGCAACAAACAGTGGCATACAATTGGCCAATGCGGCAGGGCAACAGCTACTGAACAACACAAGCAGCATAAGCAGCAGcttgcaacagttgcaacagcagcaacagcagcagcagcaacaacaacaacagttgcagccAACGCCGCGCAAATCGCGACTGCGTAAACGCTCCAAATCGCCAGATTTGCAACTGGGTGGCAGTGCCGCCGGTCAGCAACCACAGCCGGCgcatcatcagcaacaacagcaacagcagcaacaccaacaacagcaacaacagcaacaacaacaccaacaccatcATCATCCGCAAACGATACTCATCCAGGGCCAAAATCAAACATCGATCGTGAGTCTGCAGCAAACGGCCGACGGCAATTATATACCCGTTAGCACGGCTGGCGACGACTCCGACAGCGATAACAAGCCGCAAAAGATCTGCAAGACAGAGCAATCGGTGGCCTCCCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatgACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACATGTCGATCTATCGTGCAATCCCAGCACCGATACACGCGATCTATCAAaTCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCATCATCATGCAACTGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTGATTGAGGCCAAGCACTTGGCGcatgtgcagcagcaacagcagcagcagcagcaacaacagcaacagcagcagcagcagcaacaacagcagcaacagcaacatgcacatcatcatcagcatatGCACGCTCAGCAATTGTTGGCGCAgagtcagcaacagcagcagcagcaacaccaacagcagcagcagcaggcggcggtGCATGCGGCACAGCATGCAGCGCATGCCGCGCATGGGGAAATCGGTGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACAGCGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCGTCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCTCTGCAGAATGCCTTGGAGGCATTGCGTTCGGGTCAAATATCGGCGAACAAAGCATCGAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATAGCGCGTCGCGAGGGTATCCGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCCGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCCTTGAACTCAGTGCGCGTCGGTCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGCTTCAAGCGTGGCAAGTACGATGTGGTGGCCAACACCAGTGGCGTCTCGCTGATCAACGCCTCGGGCAACACGACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGtTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCGACGCCGCAGCATCACAGTACGCCGCAGCATCACAGTACGCCGCTGCACCACAGCACGCCGCAGCATCACAGTTCGCAGCAGGGGCCGCCGACGCCGCAGAATATGCAACAGCATGTGGTGCACATGCAGCAGTCGCCGCACCAGgcgcaccaccagcagcagcagcacatgcAACAGGATGTGGTCACATCGAGCAGCCAGGTGGtgcacagccagcagcagcaacagcagcagcaacaacaacaacaacagcagcagcaacagcagcagcagcagcttcagcagATCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MIKIIEVGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGSIVNANLVPGAPSPTIEQQQQHHHQQQQQQQQQEQEHQQQVQQQQQLVNSALLTQHTLATNSGIQLANAAGQQLLNNTSSISSSLQQLQQQQQQQQQQQQQLQPTPRKSRLRKRSKSPDLQLGGSAAGQQPQPAHHQQQQQQQQHQQQQQQQQQHQHHHHPQTILIQGQNQTSIVSLQQTADGNYIPVSTAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQQQQQQQQQQQQQQQQQQQQQQQQHAHHHQHMHAQQLLAQSQQQQQQQHQQQQQQAAVHAAQHAAHAAHGEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTAHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLINASGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPLHHSTPQHHSSQQGPPTPQNMQQHVVHMQQSPHQAHHQQQQHMQQDVVTSSSQVVHSQQQQQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_00538149;
- 80% Identity
- -