Dcog007213.2
Basic Information
- Insect
- Drosophila cognata
- Gene Symbol
- retn
- Assembly
- GCA_035041535.1
- Location
- JAWNLC010000241.1:11464465-11473943[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-26 6.3e-23 81.0 0.0 2 89 60 145 59 145 0.96 2 3 5.7 8.4e+03 -2.8 0.7 53 76 265 291 256 309 0.54 3 3 3 4.5e+03 -1.9 0.3 20 41 306 334 281 347 0.53
Sequence Information
- Coding Sequence
- ATGCTCATCTCGGAGGATCAAATCCAGGAGGCTCAGCCTCTGCCTGGCAACTTGTTGAACTCAAGCTTTAGATCGGAAGAGCGCGACTttgactccgactccgactccgactccatCACAACGTGTGGCAACCATTTTGCGCAAGTCCAACTCTACGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGatgatttgttttcgtttatGCAAAAGCGAGGCACGCCCATCAATCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTATATGAGCTATATAATCTGGTGATAGCTCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCGGCATTCACCCTGCGCACCCAATACATGAAGTATTTGTACCCCTACGAGTGCGAGAAGAAGAACCTCAGCACTCCCGCCGAACTGCAGGCGGCCATCGATGGCAATCGTCGCGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCCATGCACAGCCAGATGCCACTGACGACAATTTCGCGACCACCGTTGCCTGGGGGCATGCAACAGATGTCGCCACTGGCGTTGGTCACACATGCCGCGGCTGCGAACAATCAGCAGGCGCAGGCagcggccgcagcagcagcagcacaccgACGGCTGATGGGCGGGCCCGCCTTTGGTCAGATGCCGAACCTGGTGACGCAGGAGATTGAGAATCGCATGATGGAATATCTGCAGCTCATACAGGCgaagaaggagcagcagcagcagcaacagattgCGCCAGTTCTGGGCGCCACACATccccaccagcagcagcaacagcagcagcagcaacaatcgctgcatcatcaccaacaacaacaacaacaacagcagcagcagcgacagcgctCACAAAGTCCCGAGCTGAGCACACGCGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGcGAAGCCTTGAACCTTTCCGATTCGCCGCCaactttgaatttgaatcaCATAAAACGGGAAAGGGATCGCGATCCGACGCCAGAACCAACGGATCTGGAGGAAACGGCCCATCAGCCGCCACCGGCGAAACGTGTGGGCAGCGGCCTAATGCCGCCCGGATTTCCCGCCAACTTTTACTTGAATCCCCACAATATGGCCgctgtggcagcggcagccggTTTTCATCACCAAGCCGCcaacaatcatcatcatcagcagcagcaacagtcgcagcagcaggatgCTGCGTCTGAAGGTGAACCAGAGGATGAGTATGGCAATGGGGAGCACAACACCACCGGCAACTCATCGTCGCTGCATGATGACAGTGAGCCACAGCAGCTGAATGGCCACCACCtccaccatcaccatcatgACCATCACGATCTGCATCATGATCTTCATCAtgagcatcatcatcatcagaatCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCAcatcgacaacgacaacaacaacaacatcatccaCATCCAAAGCGCATCGTCACACCTCGCCGGTGTccacaaaaaagaagagcagcggcaactgcaatagcagcggcagcaccaccaccaacaacaagacgCAGTCCTTGTCGTGTGCGAAGGatgcaggcaacaacagcagcaacgccaacaGTTCCAGCGATGTCAAACTGAATCCCCTTGAGACGCTCAGTCTCCTCTCGGGCATGCAGTTTCAAGTGGCACGCAACGGCACCAATGCTAATGGAGAGCAGCAGTTAATTGTCAATCTCGAGCTAAATGGCATCAAGTACTCGGGTGTGCTGGTGGCAGCCacccaagcagcagcagttgcggcAGCCAAGTCAGAGGCAGGTCAAACTGAGCGGGAGCAGGTAGAgacgccagctgctgctgctgaagagCCAGCagtgaggagcagcagcagcatcactgAGGATGAGCTCAAGCATGAAAACAGCCAGGAACTTGGCCAGAACGAGGCAATTGATGAGGAAACAAcgcatgaacaacaacaacaacaacagcagcagcagcaacaactcacaGATGACATTGTGAATGGAGCGATTGCTGTTGGGGCGGGAATTGGTGGGGTTGGTGTTGGGGGTGCAAGTCTGCTGAAGGATGCTGTGGTCAGTTCGTAG
- Protein Sequence
- MLISEDQIQEAQPLPGNLLNSSFRSEERDFDSDSDSDSITTCGNHFAQVQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHSQMPLTTISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQQIAPVLGATHPHQQQQQQQQQQSLHHHQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERDRDPTPEPTDLEETAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHQQQQQSQQQDAASEGEPEDEYGNGEHNTTGNSSSLHDDSEPQQLNGHHLHHHHHDHHDLHHDLHHEHHHHQNHLDKSDDSAIENSPSTSTTTTTTTSSTSKAHRHTSPVSTKKKSSGNCNSSGSTTTNNKTQSLSCAKDAGNNSSNANSSSDVKLNPLETLSLLSGMQFQVARNGTNANGEQQLIVNLELNGIKYSGVLVAATQAAAVAAAKSEAGQTEREQVETPAAAAEEPAVRSSSSITEDELKHENSQELGQNEAIDEETTHEQQQQQQQQQQQLTDDIVNGAIAVGAGIGGVGVGGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00570178;
- 90% Identity
- iTF_00606850;
- 80% Identity
- -