Dcar011043.1
Basic Information
- Insect
- Drosophila carrolli
- Gene Symbol
- -
- Assembly
- GCA_018152295.1
- Location
- JAECXJ010000001.1:19434401-19436037[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2e-16 4.4e-13 48.7 0.0 2 45 352 395 351 395 0.95 2 3 0.027 59 3.5 0.0 28 39 425 436 420 440 0.88 3 3 2.7e-20 5.9e-17 61.1 0.0 2 42 461 501 460 503 0.96
Sequence Information
- Coding Sequence
- ATGAATCACCTCAAGTGGATGGGGCACTCGTCCACTATAATGGATATACAGCGCTCGCTGCGCAACGACAACGGCAGCTGCGAGGTGGTCCTGGCCTCCAGGGACGGTGTCCGAGTGCGCGCCCATCTCTTCGTGCTGAGCACTTGCAGCGAGCTGATGCGCAACCTCCTGGTGGATGTTCCGCGTGGCCAGGAGGCCACCATCGTGTTGCCCGACATCCGTGGAGATCTGCTAGAGAGCATGCTTTCCTTCATCTACATGGGCGAGACCAGCCTGCCCTCTGCCTCGCTGTCCGAGTTCCTGGAGGCCATCAACCTGCTGGGCATTAAGTCGGCCATCAGCTTCGAGTGCAATCCCTCGGCCAGTCCGTCCAACGTCGCCGATGTGAAGAACAGTCCGATGACCGTAGAGTCGGCCAAGTCGATAACCGGCCTCCAAATCGCAGAGGCGGAGCTATTGGACGAGGAGGAGGAAGAAGAGGCACAGCCGGCGGACGCCGTACCAACCTCTGTCCTGGCGGAGGACCAGCATCAGCCCACCCACTCCAGTCGCTCGCTGGAGTATCTGGATGTGTACGAGCCTCCAAAGATCACCTATTCCATTGAACATATGGACGGCAATTCGAACGGCAATCAGTTTATCCTCACCGAAAACACTGGCACCTTTACCATAACACAGTCGACTTCTAGTTTGACCAAGATGGAAGCTGATGAAACGATCACCAGTGGCGCTGAAGTGGAGCTGGTCGACGATGATGTGGACGCGGACATCACTGAGGATTCAGAGGAGCATGAAACACAGATGATCGAGGAGGAGTTCGCGCAAACCGATCCTCTGATCGAACTAAGTGCCGCTACTGAAATGGACGATGACGAGGACGCGCACGACGACCTGGCCGACGAGGAGATAGAGGACGAGAAGCCTCGTAAGTTGGGCGGAGGAAAGCCGCGCACTCGTCGCCCTGTTAATACCAAATCCCCTAAGCGACCGCCCAGTAAGCCAACGCGACTGCAGCAGTTTGTGGCGCTCAAGAGGGAAGTGAAAGACGATATCAACGACGCTTTGGATCTGGCGGCGGACGCCGTGATCATCGAGGGATTGAGCCTGCAGAAGGCCGCCGACCGATTCGACATCTCTAAGACGGTCCTTTGGCGCCGTGTGCGCACCAATCCCGCCTACATGCGGAACAACCGGGAAAGACCGTCGCTGCTAGAGGCTTACGAGCGCCTGAAGAACGGGGACTCGCTGAAAAGCATCAGCACGGAACTGCAGATCCCCATGTCCACGCTGCACCGGCACAAGATGCGCCTATCGGCCCAGGGACGCCTGCCCGACTTCGTGGCCTGCCGCCGGCGGGACACCACGCCCAAGGACGAGCTGCGGGACAAGTTAGCCAAGGCCGTGCATGCCTGTATGAACGAGGGAATGTCCCAGAACCACGCGGCTAACCTCTTCGAGATCCCCAAGAGCACGCTATGGCGACACCTGCAGCGACGTATGAGCAACGGCGATCGAAAGGTCAAAAAAGAGCTGCAGGACGAGTACGAGGACGATATGCTAACCTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRSLRNDNGSCEVVLASRDGVRVRAHLFVLSTCSELMRNLLVDVPRGQEATIVLPDIRGDLLESMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSASPSNVADVKNSPMTVESAKSITGLQIAEAELLDEEEEEEAQPADAVPTSVLAEDQHQPTHSSRSLEYLDVYEPPKITYSIEHMDGNSNGNQFILTENTGTFTITQSTSSLTKMEADETITSGAEVELVDDDVDADITEDSEEHETQMIEEEFAQTDPLIELSAATEMDDDEDAHDDLADEEIEDEKPRKLGGGKPRTRRPVNTKSPKRPPSKPTRLQQFVALKREVKDDINDALDLAADAVIIEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLLEAYERLKNGDSLKSISTELQIPMSTLHRHKMRLSAQGRLPDFVACRRRDTTPKDELRDKLAKAVHACMNEGMSQNHAANLFEIPKSTLWRHLQRRMSNGDRKVKKELQDEYEDDMLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00605685;
- 90% Identity
- iTF_00529667; iTF_00529485; iTF_00512112; iTF_00511926; iTF_00588059; iTF_00588251; iTF_00494492;
- 80% Identity
- iTF_00494492;