Basic Information

Insect: Drosophila burlai
Gene Symbol: -
Assembly: GCA_008042655.1
Location: VNJT01013727.1:8797-16754[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0002 0.015 15.8 3.4 1 23 282 304 282 304 0.98

2 10 0.00099 0.076 13.6 10.5 1 23 311 333 311 333 0.96

3 10 9.9e-05 0.0076 16.7 6.5 1 23 339 361 339 361 0.98

4 10 0.00045 0.035 14.7 1.6 1 23 367 389 367 389 0.95

5 10 2.2e-05 0.0017 18.8 0.5 1 23 395 417 395 417 0.97

6 10 2.1e-05 0.0016 18.8 0.1 1 23 423 445 423 445 0.98

7 10 0.00012 0.0093 16.4 2.0 1 23 450 473 450 473 0.97

8 10 0.0098 0.75 10.5 0.6 1 23 479 502 479 502 0.96

9 10 0.00016 0.013 16.0 0.1 1 23 563 585 563 585 0.98

10 10 2 1.5e+02 3.2 2.1 9 23 648 662 646 662 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0002	0.015	15.8	3.4	1	23	282	304	282	304	0.98
2	10	0.00099	0.076	13.6	10.5	1	23	311	333	311	333	0.96
3	10	9.9e-05	0.0076	16.7	6.5	1	23	339	361	339	361	0.98
4	10	0.00045	0.035	14.7	1.6	1	23	367	389	367	389	0.95
5	10	2.2e-05	0.0017	18.8	0.5	1	23	395	417	395	417	0.97
6	10	2.1e-05	0.0016	18.8	0.1	1	23	423	445	423	445	0.98
7	10	0.00012	0.0093	16.4	2.0	1	23	450	473	450	473	0.97
8	10	0.0098	0.75	10.5	0.6	1	23	479	502	479	502	0.96
9	10	0.00016	0.013	16.0	0.1	1	23	563	585	563	585	0.98
10	10	2	1.5e+02	3.2	2.1	9	23	648	662	646	662	0.91

Sequence Information

Coding Sequence: ATGTGCGCCGCCCAGAATCCGCCGCCCTTCGGCTATGCCTGGAGTTTTCCAGACAACGGCAGCCGCAACGCCGAATCTGTCCTGGAGATATCGCCGAACATCAACTACACGGTCAGCGGGGAGTCGATGCCCTATTTGTTATCCACGGATGGATCGTTGGCCGTGCAAAAGGATGTCAAAGGGCTCACCGGCGCCGGCAATAAGAATGTCGTGCGTCGCATGTTTGTGGTAAACGATGCCTCGTTTCCACCAGGAACACAGAGGGTAATCACCGCCGGAGGATCGTCGACAGTGGTGAAAAAGCAGGACCCCAATCAGCAGGTGTTGAGCCTGGACAAGAACTATCTGCTTGTGGATCCGgccacggcagcagcagctgcagcggcggcgggcgGCGACCCATCGGTGGCCCATCATCACCACACACTGGCGAATGGCAGCATTGTCGATGCCAAGACCGGACAGACGGTGCTAACCGCCGGCTCTGCGGCGGCAGCCAAGTCGCACTTCAGCTCCATCGGAGCGCTGCATCTAACGCAAGAGGAGTGCAACGAGATCCTGATCAAGCGCGCCATCGCTGCCGGCCATCATCAGACGCACACGATCACCACTGCCGATGGCACGCACCATCATGCGTCTGGCGGGACACCAAGTGACATACTTCCTGGTATTTCAGTTCAAGTACAGAAGGTAATCCAGGGACTCGAGGATAACGAGGACTCGCAGGGCGAAGCACCCAATTTAAAGTTGGAGCCAGGAACTTTGGAGCTGTCCCCGAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACCATTAAGAAGGAACGCCCGTACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCATCATCTGACAACCCACGCACGCGTGCACACAGGTGGTGAACGTCCCCACATCTGCACCCATTGCGGGAAGAGCTTCGCACACAAGCACTGTCTCAACAcgcatctgctgctgcactcGACGGAGCGGCCGTATCAGTGCCAGGAGTGCAAGAAGAGCTTCACCCTCAAGCACCATCTGCTGACCCATTCGCGTGTCCACAGCCGGGAGCGACCCTTCGTCTGCCAGGAGTGCGGGCGCGCCTTTCCGCTCAAGCGTCATCTGGTCACGCACAGCAAGTTTCACGCCGGCGAACGACCGTACGTTTGCGAGGAATGCGGTGAGAGCTTTGCCCAGGAGAATCACCTGATTATGCACTCGCGCTTCCATGGCTCATTGAATCCATTCGTTTGCGCCGAGTGCGGAGCCTCGTTTCCACGCAAGTTCCAGTTGGTTAACCACGGACGTATTCACGGCAAGATCCCCCACTCGTGCACGGTGTGCGGCAAAGAGTTTCTACAAAAGCGAACGCTAGTTTCCCACATGAGACGCGTACACACTGGCGAGCAGGCGCATCCCTGCGTTAGCTGCGGCGAGGGCTTCCTCACCAAGGCCGAACTGCACCAGCATGTGAGGACGGCGCATAATGGCGTTAATCCCAATACGAGCAGCGCCACCATCATAGCCAATCAGCAGCAGCTGCAACAGGCCCATCATCATCCCGGACAGGCGCATCCACAGACCATCACTGTGGTCAGCAATCCGGCCAACTCCACGCTGCTGACTGTCTCTACTACGGACGCTAATGGAGTGGCCCGACCGCAGTTTGTGTGCCGCGAGTGCGGCAGCGCCTTCAATAGCCGAGAGGCCTTAGCTCTTCACTTGCGTCTCCATACTGGCGACAAGAGCCTCATGACCGATCTGTGCGCTTTGACAGCCGCCCTGCCGGGCCACTTCTTGAGCACGGCCAGCTTGAATCCGGGCACCGTGGTCACGGCCAACCCGAATCTGGTGGGCCAGAGCCCAGTGCCCGTGCAGATAATATCGTCGACCGGGCAGGTGATGTCGCAGACCACGCTGGCCTTCTTCCAGAAGAACCACCTAATGCTGCACCAGCGTCAGCATCTGGAGACGAAGCCGGCCATATCGCAGCAACAGGAGGCGTCctcggcccagcagcagcagcagcaacaggcggCTGGGTCGGCCAGCGGCGGACAGCAGCCGGCGCAGGTTCAAGTGCAAATAATGCCCGATGGTCAGATTCATGGCAAGGTGATCAAGTACGAGATCTGTCGCAGCATTATCAAGATATATCCCTCCCGGAGAAGAGatgagaaggagaaggagaaggagcggGGCGTCAGCGTCTCGTGTAAGCGATTCCCTTaa
Protein Sequence: MCAAQNPPPFGYAWSFPDNGSRNAESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGLTGAGNKNVVRRMFVVNDASFPPGTQRVITAGGSSTVVKKQDPNQQVLSLDKNYLLVDPATAAAAAAAAGGDPSVAHHHHTLANGSIVDAKTGQTVLTAGSAAAAKSHFSSIGALHLTQEECNEILIKRAIAAGHHQTHTITTADGTHHHASGGTPSDILPGISVQVQKVIQGLEDNEDSQGEAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRTAHNGVNPNTSSATIIANQQQLQQAHHHPGQAHPQTITVVSNPANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLAFFQKNHLMLHQRQHLETKPAISQQQEASSAQQQQQQQAAGSASGGQQPAQVQVQIMPDGQIHGKVIKYEICRSIIKIYPSRRRDEKEKEKERGVSVSCKRFP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00481685;
90% Identity: iTF_00617795; iTF_00531824; iTF_00590393;
80% Identity: -